Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq979 140 2e-28 seq21 127 1e-24 seq977 125 5e-24 seq8 125 5e-24 seq992 116 2e-21 seq93 102 5e-17 seq91 87.8 1e-12 >seq979 Length=2555 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1717 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1658 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1657 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1623 >seq21 Length=757752 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 134616 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 134675 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 134676 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 134710 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/81 (86%), Gaps = 6/81 (7%) Strand=Plus/Plus Query 19948 TCTCTCTTC-AAAGTTCTTTTCAACTTTCCC--TCACGGT--ACTT-GTTCGCTATCGGT 20001 ||||||||| ||||| |||||||| |||||| ||||||| |||| |||||||||||| Sbjct 127765 TCTCTCTTCCAAAGTGCTTTTCAATTTTCCCCCTCACGGTTTACTTTGTTCGCTATCGGA 127824 Query 20002 CTCGCGGTAATATTTAGCCTT 20022 |||| ||| |||||||||||| Sbjct 127825 CTCGTGGTCATATTTAGCCTT 127845 >seq977 Length=2584 Score = 125 bits (138), Expect = 5e-24 Identities = 87/97 (90%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1957 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAAAAATCTCGT 2016 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATA 25993 | |||| |||||||||||||||||||||||||| ||| Sbjct 2017 TGATCCATTCATGCGCGTCACTAATTAGATGACAATA 2053 >seq8 Length=981529 Score = 125 bits (138), Expect = 5e-24 Identities = 87/97 (90%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 310895 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAAAAATCTCGT 310836 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATA 25993 | |||| |||||||||||||||||||||||||| ||| Sbjct 310835 TGATCCATTCATGCGCGTCACTAATTAGATGACAATA 310799 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| || | |||||| Sbjct 977271 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTGGGAGTCTCGT 977330 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 977331 CGATCCATTCATGCGCGTCACTAATTAGATGACGA 977365 Score = 102 bits (112), Expect = 5e-17 Identities = 82/97 (85%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGC--TGTGGTTTCGCTAGATAGTAGATAGGGG--GT----AATCTCGT 25956 |||||| |||||| ||||||||||||||| ||||||||||| || |||||||| Sbjct 309421 CCCGTTTTCTTGGCCTTGTGGTTTCGCTAGACAGTAGATAGGGACAGTTAAAAATCTCGT 309362 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATA 25993 | |||| |||||||||||||||||||||||||| ||| Sbjct 309361 TGATCCATTCATGCGCGTCACTAATTAGATGACAATA 309325 >seq992 Length=2438 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1474 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1533 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 1534 GCCAATATTTAGCCTTA 1550 >seq93 Length=309502 Score = 102 bits (112), Expect = 5e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 |||||| |||||||||||||||||||| |||| || || || ||| | ||||||| ||| Sbjct 295150 AAGCCCTTTCCCTTGGCTGTGGTTTCGGTAGACAGG-GACAGTGGG-AGTCTCGTTGATC 295093 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||||| ||||||||| Sbjct 295092 CATTCATGCGCGTCACTAATGAGATGACGA 295063 >seq91 Length=320879 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| || | ||| || ||| ||||||||||||||||| || | || | Sbjct 60857 ACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACC 60798 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | || ||||||||||| || || || || || || | ||| | || || || Sbjct 60797 GTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTT 60738 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || ||| || |||| | ||||| | ||||||||| | |||||| Sbjct 60737 ATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGTGTAAT 60678 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||| || |||||||| |||||||| Sbjct 60677 CGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941399237851