Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq91 100 2e-16 seq18 86.0 5e-12 >seq91 Length=320879 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || |||||| |||| || || | || ||| | ||||| || | Sbjct 60638 AAGAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGC 60697 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || ||| | ||| || ||| || || || || ||||| || || Sbjct 60698 AAGTGATACAATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGA 60757 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||| || || | || || | |||||| | |||| || Sbjct 60758 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGCGACTA 60817 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||| |||||||| || ||| | || || | || | ||||||| Sbjct 60818 CAATATTCAAAAGGAATCCACCCTCCATCTCGTCCTGCGTCTCCGCGGAGGAA 60870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 25022 GACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCA 25081 ||| ||||| |||| || ||||||||||| | |||||| || ||| | ||| Sbjct 61250 GACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGC 61309 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 || ||| || || || || || || || ||||| ||||| | || |||||||| || Sbjct 61310 CAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 61369 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| | ||||| | || || | |||| ||||| ||||| ||||| ||||| || || Sbjct 61370 ACAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCA 61429 Query 25202 TTTAGTGCT 25210 || ||||| Sbjct 61430 CTTGGTGCT 61438 >seq18 Length=819520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25044 GAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGG 25103 ||||| ||| | ||| || ||||| ||||| |||||| ||||| || || Sbjct 140287 GAAGTCGAGGCAAGTGATACGATCGAAAATGTGAAGGCCAAAATCCAGGACAAGGAGGGA 140346 Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| || ||||| ||||| | ||||| || ||||| || | ||||| | || || Sbjct 140347 ATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGAACC 140406 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||| || |||||||| || || ||| | ||||| Sbjct 140407 CTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCATCTCGTGCT 140453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320495436115