Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq107 145 6e-30 seq18 131 1e-25 seq91 87.8 2e-12 >seq107 Length=284601 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | |||||||| ||| |||| ||||| |||||| | || Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| ||||| || ||||||||||| || || || || Sbjct 95610 GACACCATTGAGAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 95551 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| |||||| | || || |||||| Sbjct 95550 CAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAAC 95491 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| || || | ||||| || ||||| Sbjct 95490 ATCCAGAAAGAGTCTACGCTGCATTTGGTCTTGCG 95456 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 ||||||||||||| || | | ||||| | || | ||||| |||||||| |||| Sbjct 96752 TCACTCTTGAAGTTGAGGCAAGTGATACGATTGAGAACGTCAAAGCCAAAATTCAGGACA 96693 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| |||||||| || ||||| || || || || || || || || || || ||||| Sbjct 96692 AGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGGAAGCAATTGGAGGACG 96633 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGAT 22435 || || |||| ||||||||||| || || || |||||| | ||| | ||| | || Sbjct 96632 GTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTTCTCCGTC 96573 Query 22436 TGCGCGGAGG 22445 | || ||||| Sbjct 96572 TCCGTGGAGG 96563 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || || || || || ||||| || || |||||||| Sbjct 95814 AAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 95755 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||| ||| | || ||||||||||| || || || || ||| | ||| Sbjct 95754 CAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAT 95695 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| ||||||||||| Sbjct 95694 CTGGTACTGCGTCTGCGCGGAGGT 95671 >seq18 Length=819520 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || |||| || || |||||| | || Sbjct 140822 ATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCC 140881 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||||||||| ||||| || || || || Sbjct 140882 GACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAG 140941 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| |||||| | |||||||||||| Sbjct 140942 CAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 141001 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | || || || ||||| |||| || || Sbjct 141002 ATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 ||||| || |||| || ||||| || | | ||||| | || | |||| ||| Sbjct 139718 GGTAAGACCATCACCCTCGAAGTTGAGGCAAGTGATACGATCGAAAACGTCAAGGCCAAA 139777 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || |||||||| |||||||| || ||||| || ||||| || || || || || ||| Sbjct 139778 ATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGAAAGCAG 139837 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || ||||| || || ||||||| |||||||| ||||||||||| || Sbjct 139838 TTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAAC 139887 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22258 ACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAG 22317 || || ||||||||| ||| ||||| | || | |||| || || ||||||||| Sbjct 140633 ACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACGTCAAGGCCAAGATCCAAGACAAG 140692 Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 || || ||||| || ||||| || || | || || ||||| || ||||| || || | Sbjct 140693 GAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGCAGTTGGAAGACGGC 140752 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 |||||| |||| || |||||||| || || ||||| ||| | ||| | || | || || Sbjct 140753 CGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATCTGGTGCTCCGTCTG 140812 Query 22438 CGCGGAGG 22445 || ||||| Sbjct 140813 CGTGGAGG 140820 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || ||||||||||| ||||| || || || || ||||| || || || ||||| Sbjct 140326 AAAATCCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAG 140385 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||| ||| | ||||||||||| || || |||||||| ||| | ||| Sbjct 140386 CAGCTGGAAGACGGCCGAACCCTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCAT 140445 >seq91 Length=320879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || || || || || || ||||| || |||||||| ||| Sbjct 61311 AAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAA 61370 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||| ||| || ||| ||||||||||| ||||| |||||| | || Sbjct 61371 CAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCAC 61430 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || |||| || || Sbjct 61431 TTGGTGCTCCGTCTGCGTGGTGG 61453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720730966865