Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 179 7e-40 seq107 140 6e-28 seq207 125 1e-23 seq91 125 1e-23 >seq18 Length=819520 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || ||||| |||||||| ||||| |||||||| |||||||| |||||||| Sbjct 141049 TCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGA 140990 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | |||||| || || || ||||| | || ||||| || || Sbjct 140989 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGG 140930 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||||||||| ||||| ||||||||| |||||| ||||| | | ||| || Sbjct 140929 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||| || || || || || |||||||| || || |||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 123 bits (136), Expect = 5e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||||||||| || |||||||| |||| || || || |||||| Sbjct 139893 TGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGC 139834 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || | || || || || ||||| ||||||||||| || || || Sbjct 139833 TTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTTG 139774 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||||||||| ||||| || || || || ||||| | ||||||||| || || Sbjct 139773 GCCTTGACGTTTTCGATCGTATCACTTGCCTCAACTTCGAGGGTGATGGTCTTACC 139718 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | |||| || || || || || || |||||||| || || | Sbjct 140822 TTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 140763 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || ||||| ||||||||||||||||| || | | || || || || | Sbjct 140762 AGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGG 140703 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 ||||||||||||||||||| ||||| ||||||||| Sbjct 140702 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 140668 >seq107 Length=284601 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || ||||| |||||||| |||||||| || || || Sbjct 95444 CCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGAC 95503 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 95504 AACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 95563 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||||||||||| ||| |||||||| | | ||| || Sbjct 95564 ATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACC 95623 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || || || || || || ||||| Sbjct 95624 TCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| ||||| || || || ||||| || |||||||| ||||| || Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| ||||| || || || ||||| | || ||||| Sbjct 95792 ATTCCTTCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACC 95851 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | || ||||| ||||| || Sbjct 95852 TCAAGTGTAATGGTCTTTCCTGT 95874 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || || |||||||| || |||||||| ||||| ||| Sbjct 96563 CCTCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 96622 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || || |||||||| ||||| || || | || || || || ||| Sbjct 96623 AGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGA 96682 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || || |||||| ||| || || || || || ||| Sbjct 96683 ATACCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACT 96742 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGG 68442 || | ||||| || || || | |||| Sbjct 96743 TCAAGAGTGATAGTCTTGCCTGGAAGGG 96770 >seq207 Length=153891 Score = 125 bits (138), Expect = 1e-23 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || |||||||||||||| || || || ||||| ||||||||| || || || ||| || Sbjct 89215 GGACTCTCGTGGTTGAAAAGAATCCCATTGCAAGCGAACATGTTGTAAGCTTCCCGGAAG 89274 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAG 268522 || | || ||||||| || ||| ||| || || ||||||| || || || | || Sbjct 89275 TTGATTACAATCCAGTAGGCGTACAACTTAGCCACGCCGTACGGTGACCGCGGGTAAAAT 89334 Query 268523 GGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCT 268582 ||||| || ||| || ||||| || | |||||||| ||||||| || || || Sbjct 89335 GGCGTTGTCTCCTTCTGCGGGATCTCCTGTACTTTGCCGTAGAGCTCACTAGTGGAGGCC 89394 Query 268583 TGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGA 268642 || ||||| || | | || |||||| | ||||| || || || ||||| ||| Sbjct 89395 TGATAGAATCGAACAGTGTCACCCAGTCCGCAGGTGCGGATCGCGTCCAGTAAACGGAGA 89454 Query 268643 GTTCCCATGCCATCCACGTCCGCTGTATACTC 268674 || || | |||||| |||| ||||| || || Sbjct 89455 GTCCCGACGCCATCGACGTTTGCTGTGTATTC 89486 >seq91 Length=320879 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || ||||||||||| |||||||| || ||| Sbjct 61804 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 61745 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | ||||| || | |||||| ||||| || || || | || ||||| || | Sbjct 61744 TGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61685 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || ||||| ||||| ||||| |||||||| ||| || || || || || | Sbjct 61684 GAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCA 61625 Query 68413 CTTCCAAGGTGATGGTTTTTCC 68434 |||| | ||| ||||| || || Sbjct 61624 CTTCGAGGGTAATGGTCTTGCC 61603 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || ||||||||||| || ||||| || ||| Sbjct 61455 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGC 61396 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || ||||| | ||| || ||||| || || || | || ||||| || | Sbjct 61395 TGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61336 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||| || || ||||| ||||||||| ||| || ||||| || || | Sbjct 61335 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCA 61276 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| | ||| ||||| || || || Sbjct 61275 CTTCGAGGGTAATGGTCTTACCTGT 61251 Score = 111 bits (122), Expect = 3e-19 Identities = 134/181 (74%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| ||||||||||| || ||| ||| || | ||||| || | Sbjct 62144 CAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCA 62085 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || | || ||||| || ||||| || ||||| || || | Sbjct 62084 GCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGA 62025 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| ||| || ||||| || || ||||| | ||| ||||| || | Sbjct 62024 TCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTAC 61965 Query 68434 C 68434 | Sbjct 61964 C 61964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606029682120