Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq98 122 2e-22 seq6 105 1e-17 >seq98 Length=303023 Score = 122 bits (134), Expect = 2e-22 Identities = 165/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || || || ||||| ||| ||| |||||| || |||||||| |||| | Sbjct 281285 CTCTTCAACGCGATTGACACCATGCCTTGCGTCAGGAAGAAAGCCGACTGGGCACTCAGC 281344 Query 42669 TGGATCGAG-AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||| ||| || || |||| || | || || | | || |||||| || | || || Sbjct 281345 TGGAT-GAGCAGCACCAACGCCACCTATGGAGAACGCATCGTGGCCTTTGCCTCGGTGGA 281403 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GA 42786 ||| ||||||||| ||| | ||||||||||||||||||||||| | | || | | | Sbjct 281404 GGGGATCTTCTTCAGCGGCTCATTCGCCTCCATCTTCTGGCTCAA-AAAACGGGGACTCA 281462 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||||| | || ||| || || |||||||| | || |||| Sbjct 281463 TGCCCGGCTTGACATTCAGCAATGAGCTCATCAGTCGCGATGAGG 281507 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 || |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||| Sbjct 282108 CCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGAAAGACAAACTTTTTCGAGAAGCGC 282167 Query 43131 GTCGCCGACTAC 43142 |||| || ||| Sbjct 282168 GTCGGAGAGTAC 282179 >seq6 Length=1030571 Score = 105 bits (116), Expect = 1e-17 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGT 244091 |||||||||| || ||||| | ||| | |||| || | | | ||||| || Sbjct 234694 TGCGCATGTTGTCATTCCAGATGCCGA---GCTCGGTGAGGTCATTGTAGAGGTGTTGGT 234638 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | ||||| || || ||||| || ||||||||||| | ||| ||||||| || || || Sbjct 234637 TGACCACTTGGAATTCTCCTGAAAGCACGCGGCGGATGAAGATGTTGCTGTTGTACGCCT 234578 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 | | |||||| ||||||| || || || || ||||| ||||||||||| |||| | | Sbjct 234577 CCACGCTCTCGTTGTTGCCGAGAATTTGGGCAGTGCTAGCAGTCGGCATTGGCGCAAGGA 234518 Query 244212 GCAGACTGTTCCTCACGCCG 244231 | |||||||| | |||||| Sbjct 234517 GGAGACTGTTGCGAACGCCG 234498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944322426174960