Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq384 93.3 3e-14 seq107 87.8 1e-12 >seq384 Length=49765 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/98 (85%), Gaps = 6/98 (6%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAAGGAA 115586 ||||||||| |||||||||||||||| |||||||| |||| ||| || |||||| | || Sbjct 364 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTATG-AA 308 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 115624 ||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 307 CCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/98 (85%), Gaps = 6/98 (6%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA-CTGAGTAAGATCTAAGGAA 114389 ||||||||| |||||||||||||||| |||||||| |||| ||| || |||||| | || Sbjct 364 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAACTG--TACGATCTATG-AA 308 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTT 114427 ||| ||||||| || ||||||||||| ||| ||| ||| Sbjct 307 CCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTT 270 >seq107 Length=284601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || || ||||| || ||| ||||||||| ||||||||||| | Sbjct 96563 CCTCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 96622 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||||||||| || || || ||||| |||||||||||| || Sbjct 96623 AGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGA 96682 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | || |||||| |||||| Sbjct 96683 ATACCTTCCTTGTCCTGAATTTT 96705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||| |||| ||| ||||| ||| ||||| |||||||| |||| ||| || Sbjct 95453 AGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGG 95512 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||| ||||| || || |||||||| ||| || | | ||| Sbjct 95513 CCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCC 95572 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 || ||| ||| ||| ||| | | |||| | || | || ||| || | || Sbjct 95573 TTATCCTGAATCTTTGCCTTGACGTT-CTCAATGGTGTCGGAAGCTTCCACCTCAAGTGT 95631 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || ||||| || |||||||||||||||||||| Sbjct 95632 GATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | ||| ||||| |||||||| || || ||||||||| ||||||||||| | Sbjct 95671 ACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 95730 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || |||| || | ||||||||||| || || || |||||||| ||| Sbjct 95731 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCC 95785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055523499642