Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq91 172 1e-37 seq18 149 1e-30 seq107 114 3e-20 seq207 84.2 5e-11 >seq91 Length=320879 Score = 172 bits (190), Expect = 1e-37 Identities = 178/232 (77%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| |||||||| | || |||||||| | ||| ||| ||||| ||||| |||||| Sbjct 60869 TCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCT 60810 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| ||||| || | || ||||| || |||||||||||||| || || || Sbjct 60809 GAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGG---TCCGG 60753 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || ||||||||||| || || || ||||| || || | ||| || | ||| Sbjct 60752 GGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTC 60693 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||| || ||||||||||| ||||| ||||||||| Sbjct 60692 AACTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | |||| ||| ||||| || || || |||||| Sbjct 61454 TCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCT 61395 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | |||||||| || |||||||||||||| || || Sbjct 61394 GAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 61335 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || ||||||||||| || || || ||||| || || | || || | || || Sbjct 61334 GATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCAC 61275 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTC 288450 |||||| || || ||||| || ||| Sbjct 61274 TTCGAGGGTAATGGTCTTACCTGTC 61250 Score = 104 bits (114), Expect = 6e-17 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || ||||| | || || |||||||| || |||||| Sbjct 62164 TCCACCACGCAGACGGAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCT 62105 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || ||||| || |||||||||||||| || || || Sbjct 62104 GAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGG---TCCGG 62048 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || ||||||||||| || || || ||||| || || | || || | || Sbjct 62047 GGGAATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTC 61988 Query 288423 TACTTCGAGCGTGATCGTCTTCCC 288446 |||||||| || || ||||| || Sbjct 61987 CACTTCGAGGGTAATGGTCTTACC 61964 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | |||| ||| ||||| ||||| || |||||| Sbjct 61803 TCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCT 61744 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || ||||| || |||||||||||||| || || || Sbjct 61743 GAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTG---GTCCGG 61687 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || ||||| ||||| || || || || || || || | ||| || | || Sbjct 61686 GGGAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTC 61627 Query 288423 TACTTCGAGCGTGATCGTCTTCCC 288446 |||||||| || || ||||| || Sbjct 61626 CACTTCGAGGGTAATGGTCTTGCC 61603 >seq18 Length=819520 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | || |||||||||||| || ||||||| | Sbjct 139917 CCGCCACGGAGACGGAGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAG 139858 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || || || ||||| ||||||||||||||||| ||| || Sbjct 139857 AGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGA 139798 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||||||||| || || |||||||| || | ||| || | || ||| Sbjct 139797 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATCGTATCACTTGCCTCAACT 139738 Query 288427 TCGAGCGTGATCGTCTTCCC 288446 ||||| ||||| ||||| || Sbjct 139737 TCGAGGGTGATGGTCTTACC 139718 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || |||||||| | || |||||| |||||||| || |||| Sbjct 140469 TCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGA 140410 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||| | || || || ||||| || |||||||| || || Sbjct 140409 CAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 140350 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| || || ||||||||||| || ||||| ||||| || | ||| || | || || Sbjct 140349 AATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGAC 140290 Query 288426 TTCGAGCGTGATCGTCTTCCC 288446 ||| ||||| || ||||| || Sbjct 140289 TTCCAGCGTAATTGTCTTGCC 140269 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || |||| |||||||| || || || | || || || || || Sbjct 141012 TCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAA 140953 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 140952 ATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTC 140893 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || ||||| ||||| |||||||||||||| |||||||| Sbjct 140892 TCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACA 140833 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 140832 AAAATTTGCATT 140821 >seq107 Length=284601 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||||| || |||||||| | || ||||| ||||| || |||| Sbjct 96017 CATG-CCACCACGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGT 96075 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || || ||||| | || || || ||||| || || ||||| || Sbjct 96076 CTGAGAGGGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCG 96135 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| ||||||||||| || || || || ||||| |||| || || | | Sbjct 96136 GAGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCT 96195 Query 288422 CTACTTCGAGCGTGATCGTCTTCCC 288446 |||||||||| || || ||||| || Sbjct 96196 CTACTTCGAGGGTAATAGTCTTGCC 96220 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | |||||| ||||| || | || || || || || Sbjct 95480 TCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAA 95539 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || |||||||| || || || || ||||| Sbjct 95540 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTC 95599 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || || ||||||||||| |||||||| || || || Sbjct 95600 TCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACA 95659 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 95660 AAGATTTGCAT 95670 >seq207 Length=153891 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 72432 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 72491 ||| | || || ||||| || || || || |||| ||| | || || ||||| || || Sbjct 89381 GAGCTCTACGGCAAAGTACAGGAGATCCCGCAGAAGGAGACAACGCCATTTTACCCGCGG 89322 Query 72492 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA-AATTACCGTGAGTC 72550 || ||||| || || ||||||||||| || ||||| ||||| || | ||| || | Sbjct 89321 TCACCGTACGGCGTGGCTAAGTTGTACGCCTACTGGAT-TGTAATCAACTTCCGGGAAGC 89263 Query 72551 GTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCC 72598 || ||||||| | ||||| |||| |||||| ||||||||||| Sbjct 89262 TTACAACATGTTCGCTTGCAATGGGATTCTTTTCAACCACGAGAGTCC 89215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632922548438