Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18 122 9e-23 seq107 120 3e-22 seq91 96.9 4e-15 >seq18 Length=819520 Score = 122 bits (134), Expect = 9e-23 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| |||| || ||| || || || |||||||| | ||| || || | Sbjct 141037 ACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCC 140978 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || ||||| ||||||||||| | || | | ||||| Sbjct 140977 ATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTT 140918 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || |||| || | | ||||||| | |||||| |||| ||||| Sbjct 140917 GTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGAT 140858 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT--TTCACGCCGA 42219 || || || || |||||||| ||||| ||||||||| | ||||| || Sbjct 140857 AGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATTCCTCCACGCAGA 140809 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || ||||||||||| | ||| || || |||| || |||||||| |||||||| Sbjct 140432 TCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAA 140373 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| ||||||||||| | || | | |||||||||| |||||| Sbjct 140372 ATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATTTT 140326 >seq107 Length=284601 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || |||||| |||||||||| || ||| || || || ||||| || | | Sbjct 95444 CCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGAC 95503 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || |||||||| ||||| || ||||| ||||||||||| | || Sbjct 95504 AACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 95563 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| ||| ||| | |||| |||| || | | |||||| | |||||| Sbjct 95564 ATACCCTCCTTATCC-TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCAC 95622 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || || || ||||| || |||||||||||||| Sbjct 95623 CTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| |||| ||| | || |||||| || || |||||||||| Sbjct 95671 ACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 95730 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 95731 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 95790 Query 42101 CACGCTCTCCTTGTC 42115 | | |||||||| Sbjct 95791 GATTCCTTCCTTGTC 95805 >seq91 Length=320879 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| || | ||| | ||| ||||||||||||||||| || Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || || || || || ||||||||||| | || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||| ||| ||| || |||| || | | || || || | ||| || Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACT 60689 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || || |||||||| || ||||| || ||||| |||||| Sbjct 60688 TCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543203151182640