Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq91 136 4e-27 seq18 131 2e-25 seq107 120 3e-22 seq92 104 2e-17 >seq91 Length=320879 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| |||||||| ||||| || || |||||| |||| Sbjct 60853 AGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCC 60794 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | || || ||||||||||| || |||||||| || || || Sbjct 60793 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 60734 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | |||||||| || || ||||| | || | ||| Sbjct 60733 TGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGTGTAATCGTC 60674 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| |||| ||| || ||||| || |||||| Sbjct 60673 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| || |||||||| || || |||||| | || Sbjct 61787 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 61728 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | || || ||||||||||| || |||||||| || || ||| Sbjct 61727 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 61668 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | |||||||| || |||||||| | || | |||| Sbjct 61667 TGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCACTTCGAGGGTAATGGTC 61608 Query 64412 TTGCC 64416 ||||| Sbjct 61607 TTGCC 61603 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || ||||| ||||||||||| || || ||| || ||||| Sbjct 61438 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCT 61379 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || |||||| | || || ||||||||||| || || ||||| || || || Sbjct 61378 TCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCC 61319 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||| |||| || |||||||| | || | |||| Sbjct 61318 TGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61259 Query 64412 TTGCCGGTC 64420 || || ||| Sbjct 61258 TTACCTGTC 61250 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || ||||| |||||||| || || |||||| | || Sbjct 62148 AGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 62089 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | || || ||||||||||| || |||||||| || || || Sbjct 62088 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 62029 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||| |||| || |||||||| | || | |||| Sbjct 62028 TGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61969 Query 64412 TTGCC 64416 || || Sbjct 61968 TTACC 61964 >seq18 Length=819520 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||||||||||| || || |||||||| | | ||| || ||||| Sbjct 140453 AGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCT 140394 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || ||||||| ||||||||||| ||||||||||| || || || Sbjct 140393 TCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC 140334 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | ||||||| || || ||||| | || | ||| Sbjct 140333 TGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAATTGTC 140274 Query 64412 TTGCC 64416 ||||| Sbjct 140273 TTGCC 140269 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| ||||| || ||||||||||| | | ||||| | || || ||||||||||| Sbjct 141019 CGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCC 140960 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| ||||||||||||||||||| || || || ||||| || ||||| || || ||| Sbjct 140959 AGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTT 140900 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || || || ||||| || | || | ||||| ||||||| || Sbjct 140899 GACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGT 140840 Query 64426 TTTTACGAAAATTTGCATT 64444 || || |||||||||||| Sbjct 140839 CTTGACAAAAATTTGCATT 140821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||| |||||||| || | || || || |||| Sbjct 139902 AGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCC 139843 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || || | || || |||||||| || |||||||| ||||| || || Sbjct 139842 TCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 139783 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| || || | ||||||| || || ||||| | || | |||| Sbjct 139782 TGGATTTTGGCCTTGACGTTTTCGATCGTATCACTTGCCTCAACTTCGAGGGTGATGGTC 139723 Query 64412 TTGCC 64416 || || Sbjct 139722 TTACC 139718 >seq107 Length=284601 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||| | ||| || ||||| || |||||||| |||| | ||||| |||| || ||||| Sbjct 95467 ATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTG 95526 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||| ||| ||||||| ||||||||||| ||||| || || || || || || || || Sbjct 95527 CTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTT 95586 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 | ||| || ||| | || || || ||||| || | || | ||||| ||||| Sbjct 95587 TGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGT 95646 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||| Sbjct 95647 CAGCGTTTTCACAAAGATTTGCAT 95670 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| || |||||||| |||| || ||| || | ||| Sbjct 96036 AGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCT 96095 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || ||||||| ||||||||||| ||||| || ||||| || || Sbjct 96096 TCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCC 96155 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| ||| || ||||| | || | ||| Sbjct 96156 TGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGGGTAATAGTC 96215 Query 64412 TTGCC 64416 ||||| Sbjct 96216 TTGCC 96220 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || ||||| | ||||| || || || ||||||||||| | Sbjct 95671 ACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 95730 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||||||||| | ||||| ||||||||||| || || Sbjct 95731 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 95790 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| || ||||| || || Sbjct 95791 GATTCCTTCCTTGTCTTGGATCTT 95814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || ||||||||||| | || || || |||| Sbjct 96578 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCC 96637 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || |||| ||||||||||| || |||||||| ||||| || || Sbjct 96638 TCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 96697 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| || ||| | ||||||| || || ||||| | ||| | || Sbjct 96698 TG-AATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACTTCAAGAGTGATAGT 96756 Query 64411 CTTGCC 64416 |||||| Sbjct 96757 CTTGCC 96762 >seq92 Length=311103 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | || || ||||| | ||||| || || |||||||| ||||| || Sbjct 304152 ACCGCCGCGGAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCAGC 304093 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| | ||||||| ||||| || |||||| |||| | |||||||||||| ||||| Sbjct 304092 GAGGGTCCTTCCGTCTTCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCGGAGG 304033 Query 64336 AATTCCT 64342 |||||| Sbjct 304032 GATTCCT 304026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635925059240