Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq107 125 7e-24 seq91 89.7 5e-13 seq98 84.2 2e-11 seq6 82.4 8e-11 >seq107 Length=284601 Score = 125 bits (138), Expect = 7e-24 Identities = 177/245 (72%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 138371 ATAAACTGTAGCCGCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTT 138430 ||||||||| || |||| || || | |||||| || ||||| | | ||||| || | Sbjct 95428 ATAAACTGTCGCTT-AGCCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCT 95486 Query 138431 GAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGAC 138490 | ||||||||||| || || || ||||||||| || || || | | | || |||| Sbjct 95487 GGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGAC 95546 Query 138491 GCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACG 138549 |||| ||||||||||| ||||| || || || ||| | |||| || | | || | | Sbjct 95547 GCTGCTGGTCCGGAGGGATACCCTCCTTATC-CTGAATCTTTGCCTTGACGTTCTCAATG 95605 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 ||||||| | |||||||| | || | ||| ||||| ||||| ||||| ||||| || Sbjct 95606 GTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATT 95665 Query 138610 TGCAT 138614 ||||| Sbjct 95666 TGCAT 95670 >seq91 Length=320879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | | || ||||||||||| ||||||||||| Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| |||||||| |||||||| || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | || || | | || || Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACT 60689 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || |||||||| || || || |||||||| Sbjct 60688 TCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | ||||| || ||||||||||||||||| Sbjct 61453 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTG 61394 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || ||||| |||| | |||| |||||||| |||||||| || Sbjct 61393 AGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 61334 Query 138508 ATACCTTCTTTGTC 138521 || || || || || Sbjct 61333 ATTCCCTCCTTATC 61320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | | ||||||||||| |||||||||||||| Sbjct 62163 CCACCACGCAGACGGAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTG 62104 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | |||| |||||||| |||||||| || Sbjct 62103 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 62044 Query 138508 ATACCTTCTTTGTC 138521 || || || || || Sbjct 62043 ATTCCCTCCTTATC 62030 >seq98 Length=303023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 |||||||| || || ||| | ||||| ||||| ||||| ||||| ||||||||||||||| Sbjct 282105 AATCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGAAAGACAAACTTTTTCGAGAAG 282164 Query 52824 CGAGTCGGCGAGTA 52837 || ||||| ||||| Sbjct 282165 CGCGTCGGAGAGTA 282178 >seq6 Length=1030571 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/129 (76%), Gaps = 8/129 (6%) Strand=Plus/Minus Query 153834 TACAGTCGC-TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||||| ||| || || || ||||| || ||||| | |||||||| || ||||||||| Sbjct 233300 TACAG-CGCATCGAATTCCTCGCCCCAGACATCGGCCAAGCCGGGACTCTCATGCGGACA 233242 Query 153893 CATCAGCGACCACATATCGTCGGCGTTG---ACGCGTCGCATGAACAGATCCGGCACCCA 153949 |||||| |||| || |||| || || || |||||||| |||||||||||||| Sbjct 233241 CATCAGGCACCAG---TCCTCGGACTTCTCCACCCGACGCATGAAGAGATCCGGCACCCA 233185 Query 153950 GAGCGCGTA 153958 ||| ||||| Sbjct 233184 GAGAGCGTA 233176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253585139120