Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq107 125 7e-24 seq91 109 5e-19 seq18 91.5 1e-13 seq98 89.7 5e-13 >seq107 Length=284601 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| ||||| |||||||| | |||||||||||| || || ||||| || | Sbjct 95444 CCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGAC 95503 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| | || | |||||||| || ||||| Sbjct 95504 AACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 95563 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| ||| | | || ||||| | || | |||||| | | || || Sbjct 95564 ATACCCTCCTTATCC-TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCAC 95622 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || |||||||| ||||| ||||| || ||||| Sbjct 95623 CTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq91 Length=320879 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | |||| || | ||| | || || || |||||||||||||| |||| Sbjct 60869 TCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCT 60810 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| ||||| || |||||| |||||||| || || || Sbjct 60809 GAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 60750 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC-CGTACTCTCGA 127064 || |||||||| ||| ||| || ||||| | || | || || | | || || | Sbjct 60749 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCT-TCAA 60691 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||| ||||| |||||||| || || || |||||||| Sbjct 60690 CTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || |||||||| ||||| ||||| |||| Sbjct 61454 TCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCT 61395 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||||||||| || |||||| |||||||| || || || Sbjct 61394 GAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 61335 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| ||| || ||||| | || | ||||| | ||| || Sbjct 61334 GATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCAC 61275 Query 127066 TTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| ||| | || || || ||| Sbjct 61274 TTCGAGGGTAATGGTCTTACCTGTC 61250 >seq18 Length=819520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || ||||| ||| | ||| ||| || || | ||| ||||| Sbjct 139887 GTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGCTTTCCC 139828 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||||| ||||| || || ||||||||| |||||| |||| Sbjct 139827 GCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTTGGCCTTG 139768 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 | | ||||| || || | ||| ||||||| ||| Sbjct 139767 ACGTTTTCGATCGTATCACTTGCCTCAACTTCGAGGGT 139730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||| | ||| | || || ||||| || |||||||||||| Sbjct 140469 TCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGA 140410 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || ||||| || |||||| | || | |||||||| || ||||| Sbjct 140409 CAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 140350 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| |||||| ||| | | ||||| || || | |||||| Sbjct 140349 AATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGAC 140290 Query 127066 TTCGACGGTCACCGTTTTGCC 127086 ||| | || | || ||||| Sbjct 140289 TTCCAGCGTAATTGTCTTGCC 140269 >seq98 Length=303023 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 |||||||| ||||| || ||| | ||||| ||||| ||||| ||||| |||||||||||| Sbjct 282102 GAGAATCCGTTCGACTTCATGGAGAACATCTCGCTGGAGGGAAAGACAAACTTTTTCGAG 282161 Query 47562 AAGCGCGTCGGCGAATA 47578 ||||||||||| || || Sbjct 282162 AAGCGCGTCGGAGAGTA 282178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492353917040