Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 100 5e-16 seq98 87.8 3e-12 >seq6 Length=1030571 Score = 100 bits (110), Expect = 5e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 204179 AGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTG 204238 ||||| |||||| | || || ||||| || ||||| | ||| |||| | |||| || Sbjct 234647 AGGTGTTGGTTGACCACTTGGAATTCTCCTGAAAGCACGCGGCGGATGAAGATGTTGCTG 234588 Query 204239 GTGAATGGTTCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 || | | || | ||| |||||||||||||| ||| || || ||||| || || ||||| Sbjct 234587 TTGTACGCCTCCA-CGCTCTCGTTGTTGCCGAGAATTTGGGCAGTGCTAGCAGTCGGCAT 234529 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || || ||||| || |||||| || ||| |||| | | || |||||||| || Sbjct 234528 TGGCGCAAGGAGGAGACTGTTGCGAACGCCGAATTTGGCAATCTTGGCCTTCAGAGCGGC 234469 Query 204358 CCAGTCGTG 204366 ||||||||| Sbjct 234468 CCAGTCGTG 234460 >seq98 Length=303023 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTG--GACATGATGAGGCCCGGCATGATCCCACG 159999 || |||| || ||| ||||| ||| ||| || ||| | | ||| ||||||| || || Sbjct 281510 GTACCTCATCGCGACTGATGAGCTCATTGCTGA-ATG-TCAAGCCGGGCATGAGTCCCCG 281453 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 ||||||||| || |||| || || | ||||| || |||||||||||||| | || Sbjct 281452 TTTTTTGAGCCAGAAGATGGAGGCGAATGAGCCGCTGAAGAAGATCCCCTCCACCGAGGC 281393 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG----TCATGGGTCCACCTTTTGG 160115 ||| ||||||| | || ||| | | |||||||||| ||| |||| || | Sbjct 281392 AAAGGCCACGATGCGTTCTCCATAGGTGGCGTTGGTGCTGCTCA----TCCAGCTGAGTG 281337 Query 160116 CCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 |||| || || ||||| || ||| |||||| Sbjct 281336 CCCAGTCGGCTTTCTTCCTGACGCAAGGCATG 281305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141076055760