Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq107 141 2e-28 seq91 127 5e-24 seq18 122 2e-22 seq92 104 6e-17 >seq107 Length=284601 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | || || || ||||| || |||| ||||||||| | ||| || Sbjct 95450 CGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTG 95509 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || || ||||||||||||||||||||| || || Sbjct 95510 CGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCC 95569 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| ||| || | |||||| | | ||| || || | Sbjct 95570 TCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGT 95629 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || || ||||||||||| ||||| Sbjct 95630 GTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTG 95667 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || ||||| ||||||||||| |||| |||||| |||| || || Sbjct 95678 CGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTA 95737 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 95738 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCT 95797 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | ||||| | || ||||| || | Sbjct 95798 TCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGT 95857 Query 199589 GTGATCGTCTTACCCGT 199605 || || ||||| || || Sbjct 95858 GTAATGGTCTTTCCTGT 95874 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| || |||||||||||||| || |||| ||||||||| | | || Sbjct 96027 CGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTT 96086 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || ||||| ||||| ||||||||||||||| || ||| Sbjct 96087 CGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCT 96146 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | ||||| || | Sbjct 96147 TCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGG 96206 Query 199589 GTGATCGTCTTACC 199602 || || ||||| || Sbjct 96207 GTAATAGTCTTGCC 96220 >seq91 Length=320879 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || ||||| || || |||||||| | |||||||| | || Sbjct 60862 CGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTG 60803 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 60802 CGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCC 60743 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | || || ||| ||| || || | Sbjct 60742 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGT 60683 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| ||||| ||||| || || || Sbjct 60682 GTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTG 60645 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || ||||||||||||| ||||||||| | || | ||||| Sbjct 62148 AGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 62089 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| ||||||||||||||||| |||||| || ||| Sbjct 62088 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 62029 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| ||| || || || | || || ||| Sbjct 62028 TGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61969 Query 199598 TTACC 199602 ||||| Sbjct 61968 TTACC 61964 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || || | ||||||||| | || | || ||| Sbjct 61438 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCT 61379 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| |||||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 61378 TCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCC 61319 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| ||| || || || | || || ||| Sbjct 61318 TGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61259 Query 199598 TTACCCGT 199605 ||||| || Sbjct 61258 TTACCTGT 61251 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || |||| ||||||||| | || | ||||| Sbjct 61787 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 61728 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||||||||| ||||| ||||||||||||||||| |||||| || Sbjct 61727 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTC 61675 >seq18 Length=819520 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| || || ||||||| ||||||||| | | |||| || || Sbjct 139902 AGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCC 139843 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| |||||||| ||||||||||| |||||| ||| ||||| ||| Sbjct 139842 TCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 139783 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| ||||| || || ||| || || || | ||||| ||| Sbjct 139782 TGGATTTTGGCCTTGACGTTTTCGATCGTATCACTTGCCTCAACTTCGAGGGTGATGGTC 139723 Query 199598 TTACC 199602 ||||| Sbjct 139722 TTACC 139718 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| | ||| || |||||||| || |||| |||||| || | || || Sbjct 141042 CGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTG 140983 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || || ||||| |||||||||||||| || ||| Sbjct 140982 CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCT 140923 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| ||||| | | ||| || || | Sbjct 140922 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGT 140863 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||||||||| Sbjct 140862 GTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTG 140825 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| ||||| || || |||| ||||| || | || || | || ||| Sbjct 140453 AGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCT 140394 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || ||||| ||||||||||||||||||||| |||||| || ||| Sbjct 140393 TCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC 140334 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || |||||| ||||| || || ||| || || |||| ||| || ||| Sbjct 140333 TGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAATTGTC 140274 Query 199598 TTACC 199602 || || Sbjct 140273 TTGCC 140269 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || || ||||| |||| ||||||||||| | || | || ||| Sbjct 140805 AGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 140746 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| | |||||||| ||||| ||| ||||| || Sbjct 140745 TCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCT 140686 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||| | || || | | ||| || || | || || ||| Sbjct 140685 TGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCACTTCGAGTGTAATAGTC 140626 Query 199598 TTACC 199602 || || Sbjct 140625 TTGCC 140621 >seq92 Length=311103 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || ||||| ||||||||||| || | ||| || ||||| | ||| Sbjct 304145 CGGAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCAGCGAGGGTC 304086 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||| ||||||||||| || ||||| || || | ||||||||||||||| |||||| Sbjct 304085 CTTCCGTCTTCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCGGAGGGATTCCT 304026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178900135890207