Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq98 140 3e-28 seq18 131 2e-25 seq91 122 9e-23 seq107 118 1e-21 >seq98 Length=303023 Score = 140 bits (154), Expect = 3e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 ||||| || |||||||| ||||||||||||||||| || |||||||||||||| || ||| Sbjct 281493 ATGAGCTCATTGCTGAATGTCAAGCCGGGCATGAGTCCCCGTTTTTTGAGCCAGAAGATG 281434 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | |||||| ||| ||||||| ||||| || | || || ||||| | ||| || Sbjct 281433 GAGGCGAATGAGCCGCTGAAGAAGATCCCCTCCACCGAGGCAAAGGCCACGATGCGTTCT 281374 Query 133051 CCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGA 133108 || | ||||| | ||||| ||||||| || ||||| ||||| |||||| ||| Sbjct 281373 CCATAGGTGGCGTTGGTGCTGCTCATCCAGCTGAGTGCCCAGTCGGC--TTTCTTCCTGA 281316 Query 133109 CGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||| ||||| || || || ||||| || Sbjct 281315 CGCAAGGCATGGTGTCAATCGCGTTGAA 281288 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| ||||| ||||| || || |||||||||||||| || |||||||||||| |||| Sbjct 280961 ACCAAGTTTTCATTGACAATTCCATCGCTGGCGGCGAAGAAAGCCAGCACGTGCGAGATG 280902 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || | |||||| | ||| ||||| |||||| | | ||| |||||||||||||| Sbjct 280901 AAGTACTGCTCGTCTTTGTT-AAGCGACTCCCACTGCTGGACGTCTTTGGACAGGTCCAC 280843 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||||| |||||||||||||| | ||||| |||||||| Sbjct 280842 CTCCTCCGTCGTCCAAAACGACGCGACCGCTTTCTTGTACAT 280801 >seq18 Length=819520 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || ||||| || || || || ||||| |||| || || || | Sbjct 140821 AATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTC 140880 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-AC 38360 ||||| | | |||| | || | || |||| ||||| || || || ||||||| || Sbjct 140881 CGACACGATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGTAT-CCCGCCGGAC 140938 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||||||||||| || ||||| |||||||| || | ||||| || ||| ||| Sbjct 140939 CAGCAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 140998 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || || |||||||||| ||||| ||||| || | || || Sbjct 140999 AACATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 113 bits (124), Expect = 5e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| ||||| ||||||||||| | ||||| ||||| ||||||| ||| ||||| Sbjct 140326 AAAATCCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAG 140385 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| || ||||| ||| ||||| ||||| || ||| |||| || ||| Sbjct 140386 CAGCTGGAAGACGGCCGAACCCTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCAT 140445 Query 38448 TTGGTGCTGCGT 38459 | ||||| ||| Sbjct 140446 CTCGTGCTCCGT 140457 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 || || ||||||||| |||| || ||||| | || | | | ||||| | || | || Sbjct 139718 GGTAAGACCATCACCCTCGAAGTTGAGGCAAGTGATACGATCGAAAACG-TCAAGGCCAA 139776 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||||| ||||| || || ||||| | || || ||||| || || | |||||| || || Sbjct 139777 AATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGAAAGCA 139836 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 | |||| |||| || || ||| |||||||||||||||||| ||| | || || ||| | Sbjct 139837 GTTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAACTCTCCATCT 139896 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 || || ||| | | ||||| Sbjct 139897 CGTCCTCCGTCTCCGTGGCGG 139917 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAA 38329 ||||| || || || |||| || || |||| || | | || ||||| | || | || Sbjct 140621 GGCAAGACTATTACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACG-TCAAGGCCAA 140679 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| || || |||||| | || || ||||| | || | ||| || || || Sbjct 140680 GATCCAAGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGCA 140739 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 | |||| |||| ||||||||| |||||||||||||| |||||| | || || ||| | Sbjct 140740 GTTGGAAGACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATCT 140799 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||| || | || || Sbjct 140800 GGTGCTCCGTCTGCGTGGAGG 140820 >seq91 Length=320879 Score = 122 bits (134), Expect = 9e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || || |||||||| || || || | || || || || Sbjct 60638 AAGAATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGC 60697 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | || | | | |||| | || | || |||| || || |||||||||||| | | Sbjct 60698 AAGTGATACAATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGG 60756 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | || || || |||||||| |||| |||||||||| ||||| Sbjct 60757 ACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGCGACT 60816 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||||||||| | || || ||| | || |||||| Sbjct 60817 ACAATATTCAAAAGGAATCCACCCTCCATCTCGTCCTGCGT 60857 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAA 38329 || || ||||| ||| |||| || ||||| | |||| | | |||| | || | || Sbjct 61964 GGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACG-TCAAGGCTAA 62022 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| || || |||||||||||| | ||||| ||||| || || | || || || || Sbjct 62023 GATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCA 62082 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||||| || | |||||||||| ||||||||||||||||||||| | || || ||| | Sbjct 62083 GCTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCTACCCTCCATCT 62142 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 || || ||| || | || || Sbjct 62143 TGTCCTCCGTCTGCGTGGTGG 62163 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||| ||| |||| || ||||| | |||| | | |||| | || | Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACG-TCAAGGC 61309 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| || || |||||||| ||| | ||||| ||||| || || | || || || Sbjct 61310 CAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 61369 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| |||| || ||||||| |||||||||||| || || || | || || || Sbjct 61370 ACAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCA 61429 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| || | || || Sbjct 61430 CTTGGTGCTCCGTCTGCGTGGTGG 61453 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 ||||| ||||| ||| |||| || ||||| | || | | | | | || | || Sbjct 61603 GGCAAGACCATTACCCTCGAAGTGGAGGCAAGTGATACAATTGAGAATGTCAAGGCCAAG 61662 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| || || |||||||||||| | ||||| ||||| || || | || || || ||| Sbjct 61663 ATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 61722 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 ||||| || | |||||||||| ||||||||||||||| || || | || || || ||| Sbjct 61723 CTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAAGAGTCCACCCTTCACTTG 61782 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 ||||| ||| || | || || Sbjct 61783 GTGCTCCGTCTGCGTGGTGG 61802 >seq107 Length=284601 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || || || ||||| | || || || || || Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| || | || || ||||| || || | ||||| Sbjct 95610 GACACCATTGAGAACG-TCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCA 95552 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| || ||||| ||||| || |||| ||||| | |||||||| Sbjct 95551 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAA 95492 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | |||||||||||||| ||||| Sbjct 95491 CATCCAGAAAGAGTCTACGCTGCATTTGGTCTTGCGT 95455 Score = 107 bits (118), Expect = 2e-18 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGA 38326 || || || ||||| || | || || ||||| | |||| | || ||| | |||| | Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATG-TTAAGGC 95816 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| || ||||| ||||||| |||| ||||| ||||| | ||| |||| Sbjct 95815 GAAGATCCAAGACAAGGAAGGAAT-CCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCA 95757 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| || ||||| || ||||||||||| ||||| |||| || | Sbjct 95756 AGCAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCC 95697 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||| |||||| || | || || Sbjct 95696 ATCTGGTACTGCGTCTGCGCGGAGG 95672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 ||||| || || ||| |||| || ||||||| |||| | ||| | || | || Sbjct 96220 GGCAAGACTATTACCCTCGAAGTAGAGGCCAGTGACACTATTGAAAATGTCAAGGCCAAG 96161 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| || || || || || || | ||||| ||||| ||||||| ||| ||||| ||| Sbjct 96160 ATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAG 96101 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 || || || | || |||||| |||||||||||||| || || |||| || ||| | Sbjct 96100 CTCGAAGATGGCCGAACCCTCTCAGACTACAACATCCAGAAAGAGTCGACTCTCCATCTC 96041 Query 38451 GTGCTGCG 38458 || || || Sbjct 96040 GTCCTCCG 96033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAAGAAAA 38329 ||||| || ||||| | || || ||||| | || | | || |||| | |||| || Sbjct 96762 GGCAAGACTATCACTCTTGAAGTTGAGGCAAGTGATACGATTGAGAACG-TCAAAGCCAA 96704 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 ||| | ||||| || || ||||| | || || |||||||| |||| |||||| || || Sbjct 96703 AATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGGAAGCA 96644 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 |||| |||| || || ||| || ||||||||||| ||||| | || || ||| | Sbjct 96643 ATTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTCCATCT 96584 Query 38450 GGTGCTGCGT 38459 || || ||| Sbjct 96583 TGTTCTCCGT 96574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163915680640