Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq107 141 2e-28 seq18 138 3e-27 seq91 132 1e-25 >seq107 Length=284601 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || |||||||| || || ||||| || | | || | || || ||||||||| Sbjct 95468 TGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGC 95527 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || || || || ||||| ||||| || || || || || ||||| ||| Sbjct 95528 TTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTT 95587 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||||||||||||||| ||| |||||| ||||| || | |||||| || ||| Sbjct 95588 GCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTC 95647 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 95648 AGCGTTTTCACAAAGATTTGCAT 95670 Score = 123 bits (136), Expect = 6e-23 Identities = 141/188 (75%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || |||||||| || || || |||||||| | ||||||| || || || Sbjct 96580 AACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCCTC 96639 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || ||||| || || || || || || |||||||| ||||| ||||| || Sbjct 96640 CAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTG 96699 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 |||||| |||||||||||||| || || |||| || |||||||| || | || Sbjct 96700 AATTTTGGCTTTGACGTTCTCAATCGTATC---ACTTGCCTCAACTTCAAGAGTGATAGT 96756 Query 195108 CTTTCCTG 195115 ||| |||| Sbjct 96757 CTTGCCTG 96764 Score = 122 bits (134), Expect = 2e-22 Identities = 140/187 (75%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| |||||||| || || ||||| || | || |||| ||||||||| Sbjct 96039 ACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCG 96098 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| ||||| || ||||| || || || Sbjct 96099 AGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 96158 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||| ||||| ||| || ||||| ||||||| ||| Sbjct 96159 ATCTTGGCCTTGACATTTTCAATAGTGTC---ACTGGCCTCTACTTCGAGGGTAATAGTC 96215 Query 195109 TTTCCTG 195115 || |||| Sbjct 96216 TTGCCTG 96222 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || |||||||| | || || | || || ||| Sbjct 95690 ACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTACGGCCGTCCTCG 95749 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || ||||| |||||||| Sbjct 95750 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGG 95809 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || ||||| ||||| || || || ||||| |||| |||||| Sbjct 95810 ATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGTGTAATGGTCTTT 95869 Query 195112 CCTGT 195116 ||||| Sbjct 95870 CCTGT 95874 >seq18 Length=819520 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || || |||||||| || || |||||||||| || || | ||||| Sbjct 141034 CAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATC 140975 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || || || || || || ||||| || || || ||||| ||||| Sbjct 140974 CTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTC 140915 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || |||||||||||| || ||||| ||| |||||| || || || | || Sbjct 140914 TTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGT 140855 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || |||| || || || || | ||||||| Sbjct 140854 CTTCCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 113 bits (124), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || ||||| || ||||||||||||| || |||| || ||||| Sbjct 140450 ACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCC 140391 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| |||||||| || || ||||| || Sbjct 140390 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGG 140331 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 ||||| ||| || || || || || || |||| || ||||| || |||| ||| Sbjct 140330 ATTTTGGCCTTCACATTTTCGATCGTATC---ACTTGCCTCGACTTCCAGCGTAATTGTC 140274 Query 195109 TTTCCTG 195115 || |||| Sbjct 140273 TTGCCTG 140267 Score = 104 bits (114), Expect = 5e-17 Identities = 136/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| || | || || | || ||||| Sbjct 140802 ACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 140743 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | || || || || || ||||||||||| |||||||| Sbjct 140742 AACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCTTGG 140683 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||| ||||| || || ||| ||||||||| || |||| ||| Sbjct 140682 ATCTTGGCCTTGACGTTTTCAATCGTATC---ACTGGCTTCCACTTCGAGTGTAATAGTC 140626 Query 195109 TTTCCTG 195115 || |||| Sbjct 140625 TTGCCTG 140619 >seq91 Length=320879 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || ||||| || |||||||||||||| ||| || || | || || || Sbjct 60850 ACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCCTCC 60791 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || ||||| || || || || || Sbjct 60790 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGG 60731 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||| || || ||| ||| |||||||| |||| |||| Sbjct 60730 ATCTTGGCCTTGACGTTCTCAATTGTATC---ACTTGCTTCAACTTCAAGTGTAATCGTC 60674 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| ||| || ||||| | |||||| Sbjct 60673 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 131 bits (144), Expect = 4e-25 Identities = 140/184 (76%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| ||||| ||||| ||| || |||| || ||||| ||||| Sbjct 61430 GTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCCAGCTG 61371 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || || || ||||| || || || || || || || || || || Sbjct 61370 TTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTT 61311 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||||||||||||| ||||| |||| |||||||| ||||||| ||||| || Sbjct 61310 GGCCTTGACGTTCTCAATTGTGTC---ACTTGCCTCCACTTCGAGGGTAATGGTCTTACC 61254 Query 195114 TGTC 195117 |||| Sbjct 61253 TGTC 61250 Score = 122 bits (134), Expect = 2e-22 Identities = 142/190 (75%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||||||||| || || ||||| ||| || || | ||||| || ||||| Sbjct 61779 GTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCAGCTG 61720 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || ||||| || ||||| || || || ||||| || || Sbjct 61719 CTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCTTGGATCTT 61660 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| |||||||| || || |||| |||||||| ||||||| ||||| || Sbjct 61659 GGCCTTGACATTCTCAATTGTATC---ACTTGCCTCCACTTCGAGGGTAATGGTCTTGCC 61603 Query 195114 TGTCAAAGTT 195123 | |||||| Sbjct 61602 T---AAAGTT 61596 Score = 120 bits (132), Expect = 7e-22 Identities = 139/186 (75%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| ||||| || ||||| ||| || || | ||||| || Sbjct 62145 ACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCC 62086 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || ||||| || || || || || Sbjct 62085 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGG 62026 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||| ||||| |||| |||||||| ||||||| ||| Sbjct 62025 ATCTTAGCCTTGACGTTCTCAATTGTGTC---ACTTGCCTCCACTTCGAGGGTAATGGTC 61969 Query 195109 TTTCCT 195114 || ||| Sbjct 61968 TTACCT 61963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109461400153907