Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq21 163 2e-34 seq91 91.5 1e-12 >seq21 Length=757752 Score = 163 bits (180), Expect = 2e-34 Identities = 315/461 (68%), Gaps = 8/461 (2%) Strand=Plus/Minus Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || |||||||||||||| |||||||| ||| | || |||||||| ||||| | ||||| Sbjct 737616 GTGGAAATTATTGCCAACGATCAAGGCAACCGCACCACTCCATCCTATGTGGCATTCACA 737557 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| |||| || ||||| || ||| |||||| | | ||||| ||||| Sbjct 737556 GATACCGAACGCCTAGTCGGCGATGCCGCCAAAAATCAAGTCGCCATGAATCCCACCAAC 737497 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || |||||| | || || ||| || | ||| | ||||||||||| Sbjct 737496 ACGGTGTTCGACGCGAAACGTCTGATCGGTCGAAAGTTCGACGATGAGTCTGTTCAGGCA 737437 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||||||||| ||| | || | || | ||||| || ||||| Sbjct 737436 GACATGAAGCATTGGCCGTTCAAGGTTATCAACAAGAGTACCAAACCGATGATCGAAGCG 737377 Query 550291 -TACTCATGAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGTTTT 550347 ||||| || | | | | |||| |||||| ||||| ||||||| || Sbjct 737376 GAGTTCATG--GG--CGAGAAGAAGACCTTCAGCCCAGAAGAAATTAGTGCTATGGTCTT 737321 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 || ||||| | || || || || | || | | || | ||| || || || Sbjct 737320 GGGCAAGATGAAGGAGACGGCGGAGGCCTTCTTGGGAGGAAAGGTGAAGGACGCCGTCAT 737261 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || ||||| ||||| ||||| || |||||||| || || || || || || Sbjct 737260 TACCGTGCCCGCTTATTTCAATGATTCACAGCGACAAGCTACGAAGGACGCCGGCCGAAT 737201 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | || | |||||||| ||||| ||||||||||| |||| Sbjct 737200 CTCCGGTTTGAATGTTCTGCGTATCATCAATGAACCGACTG 737160 Score = 102 bits (112), Expect = 7e-16 Identities = 247/372 (66%), Gaps = 4/372 (1%) Strand=Plus/Minus Query 552180 TTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCC 552239 |||||||| || | | |||| || | ||||| || ||||| ||||| || || || Sbjct 736167 TTCAATGGAAAGGAGCTGAATGGTAGCATCAATCCCGACGAGGCCGTTGCTTACGGCGCT 736108 Query 552240 GCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA--AACTACAAAATATTGTAC 552297 || | |||||||| || || | || | ||| | ||| || | | || | ||| Sbjct 736107 GCCGTGCAAGCAGCCATCCTCACCGGGGACACT--TCAAAGGAAATCCGTGATGTCTTAC 736050 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | || ||||| ||||||| || || ||| ||||||| | ||| || || | || || | Sbjct 736049 TGGTGGATGTGGCTCCTCTCTCCCTCGGTCTAGAAACGGCTGGCGGCGTTTTCACCAAGC 735990 Query 552358 TTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAG 552417 | |||| | || ||| || || || | || | || || | |||||||||| Sbjct 735989 TGGTCGAGCGCAACACTCGAATCCCCACAAAGACCTCGCAAGTCTTCACCACGTATTCAG 735930 Query 552418 ATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477 | || ||| | ||||| || |||||| | || ||||| || || | ||||| || | Sbjct 735929 ACAACCAACCGGCTGTGACTATTCAAGTATTCGAAGGCGAGCGAGCCATGACTAAGGACA 735870 Query 552478 ATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGC 552537 | ||| | || || | |||| || || ||||| ||||||||||| || ||| Sbjct 735869 ACCATCTGTTGGGCCGATTCGACTTAGTCGGAATCCCTCCGGCTCCTCGTGGCGTTCCGA 735810 Query 552538 AAATTGAAGTTA 552549 | ||||||| || Sbjct 735809 AGATTGAAGGTA 735798 >seq91 Length=320879 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314 |||||| || || ||||| ||||| ||| || ||||||||| || ||| || || | Sbjct 60860 GAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTC-GCTGAGGGTGC 60802 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 || || || || ||||||||||| || || | ||||| || || |||||||| | Sbjct 60801 GACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCT 60742 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | ||||| || || || || || ||||||||||||| | || | | ||| || Sbjct 60741 CCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACT-TGCTTCAACTTCAAGT 60683 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || || || ||||| || ||||| || ||||| Sbjct 60682 GTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029220851111290