Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq107 109 4e-19 seq18 98.7 8e-16 >seq107 Length=284601 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | ||| ||||| || || || || || |||||||| | | Sbjct 96563 CCTCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 96622 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || ||||||||||| || || || |||| ||||| ||||| || ||| Sbjct 96623 AGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGA 96682 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || |||||||| ||| || | || | || ||| | || ||| Sbjct 96683 ATACCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACT 96742 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 |||||||||| || ||||| Sbjct 96743 TCAAGAGTGATAGTCTTGCC 96762 >seq18 Length=819520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || | ||| ||||| ||||| || || || ||||| || | Sbjct 140822 TTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 140763 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | | | || ||||| ||||| || || || ||||| ||||| ||||| || | Sbjct 140762 AGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGG 140703 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || ||||| || || || || |||| | || ||| | ||||| Sbjct 140702 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCA 140643 Query 101421 CTTCAAGAGTGACCGTTTTGCC 101442 |||| || || | || ||||| Sbjct 140642 CTTCGAGTGTAATAGTCTTGCC 140621 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||||||||| || ||||| |||| || || | | || ||||| || Sbjct 139894 ATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTG 139835 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || ||||| ||||| || || || ||||| Sbjct 139834 CTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTT 139775 Score = 86.0 bits (94), Expect = 5e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| |||||||| || ||||||||||||| | |||| | | || |||| || Sbjct 140445 ATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCCAGCTG 140386 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| || || || ||||| || || || || || ||||| Sbjct 140385 CTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATTTT 140326 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 || ||| |||| | || ||| | || ||||| || || | || ||||| Sbjct 140325 GGCCTTCACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAATTGTCTTGCC 140269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271537077297