Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq91 95.1 9e-15 seq18 86.0 5e-12 >seq91 Length=320879 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || ||| || |||||||||||||| || || | ||| Sbjct 60859 AGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGA 60800 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| |||||||| ||||| ||||| || |||| ||||| |||||| Sbjct 60799 CCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 60740 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 || || ||||| || || | | || | | | || || || || || | | Sbjct 60739 TTATCCTGGATCTTGGCCTTGAC-GTTCTCA-ATTGTATCACTTGCTTCAACTTCAAGTG 60682 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || ||||||| ||| || || || |||||||| Sbjct 60681 TAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 >seq18 Length=819520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || || || || || ||||| ||||| || | || Sbjct 140811 AGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 140752 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| ||||| || |||| ||||| ||||||| ||||| ||| ||| Sbjct 140751 CCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCC 140692 Query 48669 TTGTC 48673 ||||| Sbjct 140691 TTGTC 140687 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || ||||| || || || | ||| |||| ||||||||||| || || || Sbjct 139881 TCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAG 139822 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| ||||| ||||||| |||| || |||||||| Sbjct 139821 ATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTC 139784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931002755983