Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 2e-14 seq107 89.7 3e-12 >seq18 Length=819520 Score = 96.9 bits (106), Expect = 2e-14 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || || |||||| | ||| ||||| | || || Sbjct 140463 ACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGT 140404 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| || ||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 140403 TCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCC 140344 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || || || || ||| ||| || |||||| Sbjct 140343 CTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCA 140301 >seq107 Length=284601 Score = 89.7 bits (98), Expect = 3e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| |||||||| || || || || | || ||||| | ||||| Sbjct 96568 ACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGT 96627 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || || || | |||||| || || ||||| || || || ||||| |||||||| || Sbjct 96628 TCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACC 96687 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAA 480729 ||||||||| ||||| || |||||| ||||| |||||| || | || ||||| Sbjct 96688 TTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAA-CTTCAA 96746 Query 480730 GGGTAATAGTTTTACC 480745 | || ||||| || || Sbjct 96747 GAGTGATAGTCTTGCC 96762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268118246415308