Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq180 84.2 4e-11 >seq180 Length=177566 Score = 84.2 bits (92), Expect = 4e-11 Identities = 259/372 (70%), Gaps = 34/372 (9%) Strand=Plus/Minus Query 46766 AATGAaataatatatattataataaactgtattatttgactatttt-taata-atatatg 46823 ||| | |||||||| ||| |||||| | || ||| | | ||||| ||||| |||||| Sbjct 130367 AATAATATAATATAAATTTTAATAA--TATAATATATAA-TATTTAATAATATATATATA 130311 Query 46824 ttatgg-tatatatgta-atttACGATATTTGGAAATTTTAATATGTTTACTGATATGAT 46881 ||| ||||||| || || || |||| | | ||||||||| ||| | |||| || Sbjct 130310 ATATTAATATATATATATATATAATATATATATATATTTTAATAA--TTAAT-ATATAAT 130254 Query 46882 ATTTAATAATTGGATAAACTGTATAAAATTAAGAGACATATGTATTAT-TTTATCTATAA 46940 |||||||||| |||| | ||||| ||| | | |||| ||| || ||||| ||||| Sbjct 130253 ATTTAATAAT---ATAA--TATATAATATTTAATAATATATATATAATATTTATATATAA 130199 Query 46941 TAACTATTATATTTAATTGTGCATTA-ACAGTATTAGAATtatactcattcatatattta 46999 || ||| ||||||||| | | || | | |||| | |||| | || | ||||||| Sbjct 130198 TA--TATAATATTTAATAATATAATATATAATATTTATAATATAAT-ATATA-ATATTTA 130143 Query 47000 aaacatatacatatatcaaatatagcactatgtataataaataCTTCGttacttttaatt 47059 | | ||| |||||| |||| || | ||| ||| |||| || | | | ||| | Sbjct 130142 ATATATA---ATATAT-AAATTTAATAATAT-AATATATAATATTTAATAA--TATAA-T 130091 Query 47060 aatatatttataaatttattat-taatgtatgctatatacttaaatattagaattatagt 47118 | |||||||| || || ||| |||| | | |||||| | ||||||| | |||| | Sbjct 130090 ATAATATTTAT--ATATAATATATAATATTTAATATATATTATAATATTA-ATATATAAT 130034 Query 47119 a-aaaatattta 47129 | | |||||||| Sbjct 130033 ATATAATATTTA 130022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899638419888720