Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq156 100 8e-16 >seq156 Length=201976 Score = 100 bits (110), Expect = 8e-16 Identities = 186/265 (70%), Gaps = 10/265 (4%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | |||||||| || ||||| || || || || || || |||||||| ||| Sbjct 25924 TTGATCAGGCGACGCTGGATGTAACCGGTCTCAGCGGTCTTCACGGCCGTATCAATCAGA 25983 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || ||||||| ||||| | ||||| || | |||| ||| ||| || || | | | Sbjct 25984 CCCTCACGACCGCCCATGGAGTGGAAAAAGAACTCTGACGG-CGTGAGACCGGCCAGGTA 26042 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGG 302759 ||| |||| ||||| || || ||| || || ||||||| | || | || || || Sbjct 26043 TGAGTTCTCCACGAAGCCGCGACTCTCCGGACCGTAATCGTC---CGTGATGAAATGCGG 26099 Query 302760 CAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 |||||| | | || | | ||| | ||||| ||||| || ||||||||||||||||| | Sbjct 26100 CAGGGTGCGATGTCGGA-ACCCGAAGGGGATCCGCTTGCCCTCAACGTTCTGCTGTCCGA 26158 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 || | |||| ||| || || || Sbjct 26159 CACAGGCGATCACCTGGGAGATGTT 26183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471790803260877