Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18 134 1e-26 seq107 118 1e-21 seq91 113 4e-20 seq92 89.7 5e-13 >seq18 Length=819520 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| ||||| || ||||| || ||||| || ||||| || Sbjct 140822 ATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCC 140881 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 140882 GACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAG 140941 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || ||||| || || |||||||||||| | | |||| ||||| ||| Sbjct 140942 CAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 141001 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || |||||||| ||||| |||| || || Sbjct 141002 ATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 122 bits (134), Expect = 8e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || |||||||| |||||||| ||||||| || || | |||| || || ||| Sbjct 140621 GGCAAGACTATTACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACGTCAAGGCCAAG 140680 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || || ||||| || || |||||||| |||||||| ||| Sbjct 140681 ATCCAAGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGCAG 140740 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| || | | | | || || || ||||| || |||||||| || || || || Sbjct 140741 TTGGAAGACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATCTG 140800 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 ||| | || |||| ||||| Sbjct 140801 GTGCTCCGTCTGCGTGGAGG 140820 >seq107 Length=284601 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || ||||| || || ||||| || | ||||| | |||| || || Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTTAAGGCG 95815 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| || || || || || ||| | ||||| ||||| || Sbjct 95814 AAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 95755 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | |||| ||||| ||||| || ||||| ||||| || || Sbjct 95754 CAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAT 95695 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||| |||| |||||||||| Sbjct 95694 CTGGTACTGCGTCTGCGCGGAGG 95672 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || |||||||| ||||||||||| |||| ||||| | |||| || || ||| Sbjct 96220 GGCAAGACTATTACCCTCGAAGTAGAGGCCAGTGACACTATTGAAAATGTCAAGGCCAAG 96161 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| || || ||||| || ||||| || || || || | || || || || || ||| Sbjct 96160 ATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAG 96101 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 || || ||| ||| | | ||||| || ||||| || || || ||||| || || Sbjct 96100 CTCGAAGATGGCCGAACCCTCTCAGACTACAACATCCAGAAAGAGTCGACTCTCCA 96045 >seq91 Length=320879 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || ||||| ||||| | Sbjct 60642 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGCAAGT 60701 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || |||||||| || || || ||||| || || || || Sbjct 60702 GATACAATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAG 60761 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||||||||| || ||||||||||| | | | | || || || Sbjct 60762 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGCGACTACAAT 60821 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || | || |||| | |||||||| Sbjct 60822 ATTCAAAAGGAATCCACCCTCCATCTCGTCCTGCGTCTCCGCGGAGG 60868 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || ||||| || ||||| |||||||| || || | |||||| | || | || || Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGCC 61310 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || || ||||| || || || || || ||| ||||||||||||| ||| Sbjct 61311 AAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAA 61370 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| || ||| | | || || |||||||| || || || || || ||| Sbjct 61371 CAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCAC 61430 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||||| | || |||| || || Sbjct 61431 TTGGTGCTCCGTCTGCGTGGTGG 61453 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || || || ||||| |||||||| || || | || ||| | || | || || ||| Sbjct 61603 GGCAAGACCATTACCCTCGAAGTGGAGGCAAGTGATACAATTGAGAATGTCAAGGCCAAG 61662 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 |||||||| || || ||||| || || || || || ||| ||||||||||||| || ||| Sbjct 61663 ATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 61722 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 ||||||||| | | | | || || ||||| || || || || || || |||||| Sbjct 61723 CTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAAGAGTCCACCCTTCACTTG 61782 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 ||| | || |||| || || Sbjct 61783 GTGCTCCGTCTGCGTGGTGG 61802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 ||||| || ||||| |||||||| || || | |||||| | || | || || ||| Sbjct 61964 GGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGCTAAG 62023 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| || || || ||||| || || || || || ||| ||||||||||||| || ||| Sbjct 62024 ATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 62083 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA-CTT 24909 ||||||||| | | | | || || ||||| |||||||| || || || || ||| Sbjct 62084 CTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCTACCCTCCATCTT 62143 Query 24910 G 24910 | Sbjct 62144 G 62144 >seq92 Length=311103 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| ||||| || || || || ||||| |||||||||||||||||||| || || Sbjct 304026 AGGAATCCCTCCGGACCAGCAGCGGTTGATTTTTGCCGGGAAACAGCTGGAAGACGGAAG 304085 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | | | |||||||||||||| ||||| ||||| || || | || |||| | || Sbjct 304086 GACCCTCGCTGATTATAACATTCAGAAGGAGTCGACCCTCCATCTCGTCCTGCGCCTCCG 304145 Query 24925 CGGAGGCGG 24933 ||| || || Sbjct 304146 CGGCGGTGG 304154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889608693880