Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 163 4e-34 seq26 150 3e-30 seq59 140 5e-27 seq42 136 6e-26 seq164 113 7e-19 seq156 109 9e-18 seq80 105 1e-16 seq374 100 5e-15 seq4 95.1 2e-13 seq17 89.7 8e-12 >seq6 Length=1030571 Score = 163 bits (180), Expect = 4e-34 Identities = 183/242 (76%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || || ||| ||| Sbjct 710009 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCGAGCTCTCCGGGCA 709950 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| ||||||| | ||| ||| |||||| || | Sbjct 709949 GTAGAAGTCGGACAGCGGTTTGGATTTCGCGGGAGGTGATGGTGGACTTCTTGTT-GTAC 709891 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| ||||| | ||| | | |||| || |||| ||||||||||| || |||||| Sbjct 709890 TGCGAGAGGCGCGAAGACTCTGCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTTC 709831 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| | ||||| ||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 709830 ATGATGGCCATCGCCTTGGAGGAGACTCCAGTGTCGGGGTGGACCTGCTTCAACACCTTG 709771 Query 1485709 TA 1485710 || Sbjct 709770 TA 709769 Score = 145 bits (160), Expect = 1e-28 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| || ||||||||| | || || || ||| ||| Sbjct 485214 TGTATTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTAGCGAGCTCTCCGGGCA 485273 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| ||||||| | ||| || |||||| || | Sbjct 485274 GTAGAAGTCGGACAGCGGTTTGGATTTCGCGGGAGGTGATGGTAGACTTCTTGTT-GTAC 485332 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| ||||| | ||| | | |||| || |||| ||||||||||| || |||||| Sbjct 485333 TGCGAGAGGCGCGACGACTCTGCGGCGATCCGCTCGAAAATGTCGTTGACGAAGGAGTTC 485392 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| | ||| | ||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 485393 ATGATGGCCATTGCCTTGGAGGAGACTCCAGTGTCGGGGTGGACCTGCTTCAACACCTTG 485452 Query 1485709 TA 1485710 || Sbjct 485453 TA 485454 Score = 132 bits (146), Expect = 8e-25 Identities = 187/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || || |||||||| |||| || || ||| ||| Sbjct 996992 TGTATTTCGTGACAGCCTTGGTGCCTTCAGATACGGCGTGTTTGGCGAGCTCTCCGGGCA 997051 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || || |||||||| || || ||||||| || ||| |||||| | | Sbjct 997052 ACAGGAGTCGGACGGCGGTTTGAATTTCGCGGGAAGTAATGGTGGACTTCTTGTTGTATT 997111 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | ||||| | ||| | | |||| || |||| ||||||||||| || ||||| Sbjct 997112 GCGAG--AGGCGCGACGACTCTGCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTT 997169 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| | ||||| ||| ||||| || ||| ||||| |||||||| ||||| || Sbjct 997170 CATGATGGCCATCGCCTTGGAGGAGACTCCAGTGTCAGGGTGAACCTGCTTCAGCACTTT 997229 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | || ||||||||| Sbjct 997230 GTAGATGTAGATCGAGTACGA 997250 Score = 127 bits (140), Expect = 3e-23 Identities = 186/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || || |||||||| |||| || || ||| ||| Sbjct 1026484 TGTATTTCGTGACAGCCTTGGTGCCTTCAGATACGGCGTGTTTGGCGAGCTCTCCGGGCA 1026543 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || || |||||||| || || ||||| | ||| ||| ||||| | | Sbjct 1026544 ACAGGAGTCGGACGGCGGTTTGAATTTCGCGAGAAGTGATGGTGGACTTTTTGTTGTATT 1026603 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | ||||| | ||| | | |||| || |||| ||||||||||| || ||||| Sbjct 1026604 GCGAG--AGGCGCGACGACTCTGCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTT 1026661 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| | ||||| ||| ||||| || ||| ||||| |||||||| ||||| || Sbjct 1026662 CATGATGGCCATCGCCTTGGAGGAGACTCCAGTGTCAGGGTGAACCTGCTTCAGCACTTT 1026721 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | || ||||||||| Sbjct 1026722 GTAGATGTAGATCGAGTACGA 1026742 >seq26 Length=693737 Score = 150 bits (166), Expect = 3e-30 Identities = 191/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || |||||||||||||||||||| || |||||||| |||| || || ||| | | Sbjct 85520 TGTATTTCGTGACGGCCTTGGTACCCTCGGATACGGCGTGTTTGGCGAGCTCTCCGGGTA 85461 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| ||||||| | ||| ||| ||||| || | Sbjct 85460 ACAAGAGTCGGACTGCGGTTTGGATTTCGCGGGAGGTGATGGTGGACTTTTTGTT-GTAC 85402 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| ||||| | |||| | |||| || |||| ||||||||||| || |||||| Sbjct 85401 TGCGAGAGGCGCGACGATTCGGCGGCGATCCGTTCGAAGATGTCGTTGACGAAGGAGTTC 85342 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| | ||||| ||| |||| || ||||||||| |||||||| ||||||||| Sbjct 85341 ATGATGGCCATCGCCTTGGAAGAGACTCCAGTGTCGGGGTGAACCTGCTTTAGCACCTTG 85282 Query 1485709 TAAACAAAGGACGAGTACGA 1485728 || | || ||||||||| Sbjct 85281 TAGATGTAGATCGAGTACGA 85262 >seq59 Length=417714 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || ||||| || ||||||| || || ||| Sbjct 173303 TGTACTTGGTGACAGCTTTGGTGCCCTCAGACACGGCATGTTTGGCCAGCTCCCCCGGCA 173244 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || ||||| |||||||||||||| || | ||| ||| ||||| | | Sbjct 173243 GCAGAAGTCGCACTGCGGTCTGGATCTCACGTGAAGTGATGGTGGATTTTTTGTTGTATT 173184 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | | ||||| || ||| | |||| || |||| ||||||||||| || ||||| Sbjct 173183 GGGAG--AGGCGCGAGGACTCAGCAGCGATCCGCTCGAAGATGTCGTTGACGAAAGAGTT 173126 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || | ||||| ||| ||||| || |||||||||||||||||| |||||||| Sbjct 173125 CATAATGGCCATCGCCTTGGAGGAGACTCCGGTGTCGGGGTGCACCTGCTTCAGCACCTT 173066 Query 1485708 GTA 1485710 ||| Sbjct 173065 GTA 173063 >seq42 Length=520363 Score = 136 bits (150), Expect = 6e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 2035569 AAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCCACC 2035628 |||||||| ||||| || | |||||||| | || | |||| || || |||| Sbjct 219755 AAGCGCACTGACGATATCAGCCAGTGGGACAGCGAATTCCTCAAGGTTGATCAGGGCACC 219814 Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||| ||| ||||||| || ||||||||||||||||| ||| ||||||||| | | Sbjct 219815 CTCTTCGAGCTGATCCTGGCGGCCAACTACCTCGACATGAAGGGCCTCCTCGACGTCTGC 219874 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| |||||||| | || |||||||||||||| ||||| ||||| ||||| Sbjct 219875 TGCAAGACTGTGGCCAATATGATTAAGGGCAAGTCGCCGGAGGAGATCCGTCGAACCTTC 219934 Query 2035749 AACAT 2035753 ||||| Sbjct 219935 AACAT 219939 >seq164 Length=195504 Score = 113 bits (124), Expect = 7e-19 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 118758 ATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCC 118817 || || ||||| |||| ||||||||||| |||| || || | ||||| ||||||| Sbjct 50558 ATCTCCACGATACGCGCAATCTTGCTCAGTCCGACGACTTTGTTCTTGGGCAAGTAGCCC 50499 Query 118818 ACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATG 118877 ||||| |||| |||| || |||| || ||||||||||||||||||||| | ||||||| Sbjct 50498 ACGTGGACCTTCCCGAAGAACGGCACCAAATGGTGCTCGCACATGGAGAAGATGTCAATG 50439 Query 118878 TCGCGCACGGTCACCATCTCGCCCGACG-TCTCGGCAAAGAGGGCGTCG 118925 || ||| | ||||| || | || | |||| || |||| |||||| Sbjct 50438 TCCTTGACGATGACCATTTC-CTCGTGGTTCTCCGCGAAGATTGCGTCG 50391 >seq156 Length=201976 Score = 109 bits (120), Expect = 9e-18 Identities = 197/285 (69%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 430905 AACATCACCCAGATGTGCGGCTGCGTGGGCCAGCAAAGCAATGAGGGCCAGCGCATCCAC 430964 |||||| ||||| || || ||| || || ||||| | | ||||||| |||| |||| | Sbjct 26183 AACATCTCCCAGGTGATCGCCTGTGTCGGACAGCAGAACGTTGAGGGCAAGCGGATCCCC 26124 Query 430965 TCTGAATCGGGCTCG-----CGCACCCTGGGCTGC-TACCGTCACGC-CGAGGCCGTGCC 431017 | ||||| || ||||||||| | || | | ||||| ||| || || Sbjct 26123 T-----TCGGGTTCCGACATCGCACCCTG--CCGCATTTCATCACGGACGATTACGGTCC 26071 Query 431018 GCCGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGA 431077 | ||||| |||||||| ||| ||||| ||| | ||| |||| || || Sbjct 26070 G------GAGAGTCGCGGCTTCGTGGAGAACTCATACCTGGCCGGTCTCACGCCGTCAGA 26017 Query 431078 GATGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGC 431137 | | ||| | ||| || ||||| || |||||||| | || |||||||| ||||| || Sbjct 26016 GTTCTTTTTCCACTCCATGGGCGGTCGTGAGGGTCTGATTGATACGGCCGTGAAGACCGC 25957 Query 431138 CGAGACGGGCTACATCCAGCGTCGGTGCATCAAATCGATGGAGAG 431182 ||||| || |||||||||||||| |||||||| |||||||| Sbjct 25956 TGAGACCGGTTACATCCAGCGTCGCCTGATCAAATCCATGGAGAG 25912 Score = 95.1 bits (104), Expect = 2e-13 Identities = 127/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| ||||||||||||| || || ||||||||||| |||||||||||||| ||| Sbjct 28163 AGCGTCTCAAGGGCAAGGAAGGTCGCATCCGCGGCAACCTGATGGGCAAGCGCGTGGACT 28104 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGAC--ATTGACGAGGTGGGCGT 429178 | | |||||| | ||||||| ||||| ||| |||| | || || |||| || || Sbjct 28103 TCTCTGCGCGCACAGTCATCACACCCGATCCC--AATCTGCGGATCGATCAGGTCGGTGT 28046 Query 429179 GCC-CTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCCCTT 429229 ||| | || ||| | ||| ||||||||||| ||| || |||||||| Sbjct 28045 GCCGCGGACAG-TCGCCCAGAACCTCACCTTTCCGGAGATTGTCACGCCCTT 27995 >seq80 Length=362415 Score = 105 bits (116), Expect = 1e-16 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1485480 GACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGC- 1485538 ||| || ||||| ||||| ||||| |||||| ||| || || ||| | || | ||| Sbjct 328228 GACAGCTTTGGTGCCCTCGGAGACAGCGTGCTTGGAGAGCTCCCCGGGGATCAGCAGCTT 328287 Query 1485539 GCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGC 1485598 ||| | ||| ||| || || | ||| |||| |||| | | || || || | Sbjct 328288 GCAAGA-GGTGGAGATGTCCCGCGCCGAGATGGTGTGTTTCTTGGTCATCCGGGCTAGCC 328346 Query 1485599 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA-AACGAGTTCATGATCGAC 1485657 | |||||||||| ||| || || |||| |||||| |||| || ||||||||||| | Sbjct 328347 GACCGGCCTCGGCGCCAATCCGCTCGAACATGTCCA-GACAGAAGGAGTTCATGATGTCC 328405 Query 1485658 ATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| |||||||||| ||| | ||| ||||||||||| |||||| Sbjct 328406 ATCGCCTTGCCGGAGATGCCCTGGTCCGCGTGAACCTGCTTGAGGACCTTG 328456 >seq374 Length=53115 Score = 100 bits (110), Expect = 5e-15 Identities = 176/246 (72%), Gaps = 14/246 (6%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || || ||| |||| |||| || || ||| ||| Sbjct 3597 TGTATTTCGTGACAGCCTTGGTGCCTTCAGATACG-CGTGT-TGGCGAGCTCTCCGGGCA 3654 Query 1485530 TGATCAGG--CGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTT 1485584 |||| || |||| ||| || || ||||| | ||| ||| || | ||||| Sbjct 3655 A---CAGGGTCGGACGG-GGTTTGAATTTCGCGAGAAGTGATGGTGGACTTTTG-TTGTT 3709 Query 1485585 AGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 | |||| | |||| || | || | | |||| || |||| ||||||||||| || || Sbjct 3710 ATTGCGAGAGGCGCGGACGAC-TCTGCGGCGATTCGCTCGAAGATGTCGTTGACGAAGGA 3768 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| | ||||| ||| ||||| || ||| ||||| |||||||| ||||| Sbjct 3769 GTTCATGATGGCCATCGCCTTG-AGGAGACTCCAGTGTCAGGGTGAACCTGCTTCAGCAC 3827 Query 1485705 CTTGTA 1485710 ||||| Sbjct 3828 TTTGTA 3833 >seq4 Length=1074739 Score = 95.1 bits (104), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 652913 ATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCACAACCAGGCGCCGCGCAAC 652972 || || || | |||||| |||||||| |||||| || | ||||||||| | ||||| ||| Sbjct 1020868 ATTCTCGGTGTCTGCGCGTCCATCATTCCCTTTCCCGATCACAACCAGTCTCCGCGTAAC 1020809 Query 652973 ATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTC-GTGTCGCTCAACGCCGATCA 653031 | |||||| | |||||||||||||| || || ||| | || |||| | || Sbjct 1020808 ACCTACCAATCCGCCATGGGCAAGCAAGCCATGGGTGTCTATATC-AGCAACTTCAATGT 1020750 Query 653032 CGCCATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAGGTGCCGCTGGT 653082 | ||| |||||| | | ||| ||||| |||||||||| |||||||| Sbjct 1020749 CCGCATGGACACCCTCGCCAACGTCCTCTACTACCCGCAGTCACCGCTGGT 1020699 >seq17 Length=826660 Score = 89.7 bits (98), Expect = 8e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 429047 CAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGG 429106 ||||||| ||| | |||| | ||||| ||| | ||||| | ||||||||| | || Sbjct 716021 CAAGGGCTTCGAGCAGCGGCTGAAGGGGAAGCACGGCCGATTTCGCGGCAATCTTAACGG 716080 Query 429107 CAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGA 429166 |||||| |||||||| | | ||| | ||||||||||||||||| | || || || Sbjct 716081 CAAGCGGGTCAACTTCAGCGGTCGCACTGTCATCAGTCCCGACCCGAATCTCCGGATGGA 716140 Query 429167 CGAGGTGGGCGTGCC-CTATGAGATCGTCAAGACGCTCACCTTTCC 429211 ||| || || ||||| ||| | || | |||| ||||||||||| Sbjct 716141 CGAAGTCGGTGTGCCGATAT-ATATGGCGAAGATCCTCACCTTTCC 716185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916095241748819