Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq91 116 2e-21 seq107 96.9 2e-15 seq18 89.7 3e-13 >seq91 Length=320879 Score = 116 bits (128), Expect = 2e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | |||||| || || | |||| ||||| ||||| || ||||| Sbjct 60870 TTCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGC 60811 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| |||| | || ||||| ||||||||||| |||||||| || |||||||| | | Sbjct 60810 TGAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 60751 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | |||||||| || | || || |||||| | || | ||| | || || | Sbjct 60750 GAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAA 60691 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGG 34985 | |||| || || ||||| ||||| || ||||| || ||||||||||| | |||| Sbjct 60690 CTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTCTTGTGG 60634 Score = 102 bits (112), Expect = 5e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||| ||||| ||||| ||||| ||| |||| |||| Sbjct 61787 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 61728 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||| |||||||| || |||||||| | || | |||||||| || Sbjct 61727 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 61668 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| | ||||| || || | ||| |||| Sbjct 61667 TGGATCTTGGCCTTGAC--ATTCTCAATTGTATCACTTGCCTCCACTTCGAGGGTAATGG 61610 Query 34944 TCTTTCC 34950 |||| || Sbjct 61609 TCTTGCC 61603 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||| ||||||||||| ||||| ||| | || | || Sbjct 61438 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCT 61379 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || |||||||| |||||||| || |||||||| | || | |||||||| || Sbjct 61378 TCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCC 61319 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||||| || || | ||| |||||| Sbjct 61318 TGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61259 Query 34946 TTTCCCGT 34953 || || || Sbjct 61258 TTACCTGT 61251 Score = 95.1 bits (104), Expect = 8e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||| || ||||| ||||| ||| |||| |||| Sbjct 62148 AGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 62089 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||| |||||||| || |||||||| | || | |||||||| || Sbjct 62088 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 62029 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||||| || || | ||| |||||| Sbjct 62028 TGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTC 61969 Query 34946 TTTCC 34950 || || Sbjct 61968 TTACC 61964 >seq107 Length=284601 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| ||||| || | ||| ||||||||| ||||| || || || Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || | || || || ||||| ||||||||||| || || |||||||| |||| Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || || | | |||| ||| ||||| || Sbjct 95792 ATTCCTTCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACC 95851 Query 34931 TCAACGGTTATGGTCTTTCCCGT 34953 |||| || ||||||||||| || Sbjct 95852 TCAAGTGTAATGGTCTTTCCTGT 95874 >seq18 Length=819520 Score = 89.7 bits (98), Expect = 3e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | || | || ||||| || | ||| |||||||| ||||| ||||| | Sbjct 140822 TTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 140763 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| | || |||| ||||| ||||||||||||| || ||||| || | | Sbjct 140762 AGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGG 140703 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || |||||| | | |||| ||| |||| || | Sbjct 140702 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCA 140643 Query 34929 CATCAACGGTTATGGTCTTTCC 34950 | || | || || ||||| || Sbjct 140642 CTTCGAGTGTAATAGTCTTGCC 140621 Score = 84.2 bits (92), Expect = 1e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| ||||| || || | || | || |||| |||||||| |||||| Sbjct 139881 TCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAG 139822 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||| || | || | || |||||||| | ||||| |||||| | Sbjct 139821 ATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTTT 139762 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 | |||| ||| | ||||| || || | ||| |||||||| || Sbjct 139761 TCGATCGTATCACTTGCCTCAACTTCGAGGGTGATGGTCTTACC 139718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687159509599