Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 3e-14 seq107 87.8 1e-12 seq91 82.4 6e-11 >seq18 Length=819520 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||| || | || || || || || || |||| ||| ||| Sbjct 140821 AATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTC 140880 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| || || ||||| | || ||| || Sbjct 140881 CGACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCA 140940 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| ||| || || ||||||||||| | | || || | || ||||| Sbjct 140941 GCAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAA 141000 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||| || || ||||| ||| ||||| |||| ||| | |||| || ||| Sbjct 141001 CATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGGA 141049 >seq107 Length=284601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || || || || || || | || ||| ||| | Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||||| ||||| || || | || ||| ||| Sbjct 95610 GACACCATTGAGAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 95551 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || || ||||| ||||||| | || || | ||||||||| Sbjct 95550 CAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAAC 95491 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||||||| |||| |||| ||| Sbjct 95490 ATCCAGAAAGAGTCTACGCTGCATTTGGTCTTG 95458 >seq91 Length=320879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107580 ACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAA 107639 ||||| || ||||||||| ||||| |||||| | || || | | | || || Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGCC 61310 Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 ||||| ||||| || || | ||| ||| |||||| | || || | ||| || ||| Sbjct 61311 AAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAA 61370 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 |||||||| |||| | ||| | |||||||||||||| || ||||| || | ||| Sbjct 61371 CAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCAC 61430 Query 107760 ATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||| | | |||| || |||| Sbjct 61431 TTGGTGCTCCGTCTGCGTGGTGGAA 61455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869892077069