Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq91 138 2e-27 seq107 131 3e-25 seq18 129 1e-24 >seq91 Length=320879 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || | || || || ||||| || || ||||| || || Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || ||||| |||||||| || | || || || || || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||| || ||||| || || || || ||||| |||||| | | ||| ||| Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACT 60689 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || ||||||||||| |||| ||||| || || ||||||||| || Sbjct 60688 TCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTCTT 60638 Score = 111 bits (122), Expect = 3e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || |||||||| || || || || Sbjct 61802 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTG 61743 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| |||||||| || | || || || || || Sbjct 61742 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 61683 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||||||||| ||||| || || ||||| ||||| |||||| | | || ||| Sbjct 61682 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCACT 61623 Query 82764 TCCAAAGTTATCGTCTTGCCT 82784 || | || || ||||||||| Sbjct 61622 TCGAGGGTAATGGTCTTGCCT 61602 >seq107 Length=284601 Score = 131 bits (144), Expect = 3e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | || || || || || ||||| || || ||||| || Sbjct 96563 CCTCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 96622 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| |||||| || | ||| || || || || || || | || ||||| ||||| Sbjct 96623 AGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGA 96682 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||| || ||||| || || |||||||||||| | | || ||| Sbjct 96683 ATACCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACT 96742 Query 82764 TCCAAAGTTATCGTCTTGCCTG 82785 || | ||| || |||||||||| Sbjct 96743 TCAAGAGTGATAGTCTTGCCTG 96764 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || ||||| ||||| |||||||| || || || || || | | | || Sbjct 95455 ACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCC 95514 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || |||||||| || || | || || || ||||| || || ||||| Sbjct 95515 GTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTT 95574 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||||||||| || || || ||||| || || || ||| || || | || || Sbjct 95575 ATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGAT 95634 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||| ||| || ||||| || ||||| Sbjct 95635 CGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || || || || ||||| || || ||||||| Sbjct 95670 TACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAG 95729 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || || || || || || ||||| || | || || || || | Sbjct 95730 ACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 95789 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| || || |||||||||||||| ||| | |||| Sbjct 95790 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTA 95849 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || ||||| ||||| Sbjct 95850 CCTCAAGTGTAATGGTCTTTCCTGT 95874 Score = 120 bits (132), Expect = 6e-22 Identities = 137/183 (75%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || |||||||| || || || || || || ||| || ||||| || || Sbjct 96045 TGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCGAGCTGC 96104 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || || | || || || ||||| || ||||||||||| || ||||| Sbjct 96105 TTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTG 96164 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| || ||| | | |||||||| | || || |||||||||| | Sbjct 96165 GCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGGGTAATAGTCTTGCCTG-C 96223 Query 82788 AAC 82790 ||| Sbjct 96224 AAC 96226 >seq18 Length=819520 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || ||||||||||| ||||| ||||| || || ||| || Sbjct 140457 ACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCC 140398 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || || | || || || ||||| ||||| ||||| Sbjct 140397 GTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTT 140338 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || || || |||||||| ||||||||| | | || ||||||| || || Sbjct 140337 GTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAAT 140278 Query 82775 CGTCTTGCCTG 82785 |||||||||| Sbjct 140277 TGTCTTGCCTG 140267 Score = 122 bits (134), Expect = 2e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || | || || || ||||| ||||| || || || ||||| Sbjct 140820 CCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAG 140761 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| | || || || || ||||| | | || ||||| || || Sbjct 140760 AGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGA 140701 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || || ||||||||||||||| | | ||| ||| Sbjct 140700 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCACT 140641 Query 82764 TCCAAAGTTATCGTCTTGCCTG 82785 || | || || |||||||||| Sbjct 140640 TCGAGTGTAATAGTCTTGCCTG 140619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981809324301719