Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18 152 5e-32 seq107 138 1e-27 seq91 102 8e-17 seq98 82.4 7e-11 >seq18 Length=819520 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||||||| || |||| | | | ||||| ||||||||||| Sbjct 141018 GTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 140960 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||||||||||||||| || ||||| ||||||||||| |||||| ||| Sbjct 140959 AGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTT 140900 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||||| | ||||| |||| |||| || || |||||||| || Sbjct 140899 GACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGT 140840 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 140839 CTTGACAAAAATTTGCAT 140822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||| || |||||||| |||||||||||| || || || || || || ||| Sbjct 140445 ATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCG--TCTTCCAGC 140388 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||||||| ||| ||||||| ||||||||||| ||||| || || |||||||| Sbjct 140387 TGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTC 140335 >seq107 Length=284601 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||||||||| || ||||| || || |||| |||||||||| Sbjct 95465 AAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGC 95524 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || ||||||| ||||||||||| |||||||| || ||||| || ||| Sbjct 95525 TGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATC 95584 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | ||||| ||||||| | ||||| || | |||| || || ||| Sbjct 95585 TTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCG 95644 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || ||||| Sbjct 95645 GTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | || | | | || |||||||||||||| Sbjct 96051 GTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCA-TCTTCGAGCTGCTTGCC 96109 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| |||||||| |||||||| || |||||| ||| Sbjct 96110 AGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTT 96169 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || | |||| ||||| ||| ||| || |||| ||| | || ||||| Sbjct 96170 GACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGGGTAATAGTCTTGCC 96220 Score = 102 bits (112), Expect = 8e-17 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| ||||| || |||||||| || || ||| |||||||||| Sbjct 95695 ATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGT--ACGGCCGTCCTCGAGC 95752 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||| |||| Sbjct 95753 TGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATC 95812 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| |||||| | | ||| || || | || | ||| || || Sbjct 95813 TTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGTGTAATGGTCTTTCCT 95872 Query 133635 GT 133636 || Sbjct 95873 GT 95874 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||||||||| ||||| || |||||||| | | | | ||| |||||| | Sbjct 96586 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATC--CGAGAGAGTTCGACCGTCCTCCAAT 96643 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| |||||| |||| ||||||||||| || ||||| || ||||||||||| ||| Sbjct 96644 TGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTC-CTGAAT 96702 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | ||||| ||| || | | ||| || || | |||| || ||||| Sbjct 96703 TTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACTTCAAGAGTGATAGTCTTGCC 96762 >seq91 Length=320879 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || || || |||||||| |||| | ||| ||| |||||| |||| Sbjct 60845 ATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACC-GTCCTCCAGCT 60787 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || ||||||||||| || || || || ||||| || ||||| Sbjct 60786 GCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCT 60727 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| || || | | || || || | || | || ||||| | Sbjct 60726 TGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGTGTAATCGTCTTGCCCG 60667 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || ||||| |||||||| Sbjct 60666 TCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| |||| | ||| | | | ||||| || Sbjct 61781 AAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCA-TCCTCCAG 61723 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || ||||||||||| || || || || ||||| || ||| Sbjct 61722 CTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCTTGGAT 61663 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| || || | | |||||| |||| ||| | ||| ||||| Sbjct 61662 CTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCACTTCGAGGGTAATGGTCTTGCC 61603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || || | ||||||||||||||| || ||||| |||| | || || || || || | Sbjct 61432 AAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCG--TCTTCCA 61375 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || || ||||||||||| || ||||| || ||||| || || Sbjct 61374 GCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGA 61315 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | ||||| ||||| | | |||||| |||| ||| | ||| || | Sbjct 61314 TCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTAC 61255 Query 133633 CGGTC 133637 | ||| Sbjct 61254 CTGTC 61250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| || || || ||||| |||| | ||| | | | ||||| |||| Sbjct 62140 ATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCA-TCCTCCAGCT 62082 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || ||||||||||| || || || || ||||| || ||||| Sbjct 62081 GCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCT 62022 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 | ||||| | ||||| ||||| | | |||||| |||| ||| | ||| || || Sbjct 62021 TAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTACC 61964 >seq98 Length=303023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 |||||| |||||||| ||||| ||||||||||| || ||||||| ||| ||||| | ||| Sbjct 282179 GTACTCTCCGACGCGCTTCTCGAAAAAGTTTGTCTTTCCCTCCAGCGAGATGTTCTCCAT 282120 Query 120414 AAACTCGAACGGGTT 120428 || |||||||| || Sbjct 282119 GAAGTCGAACGGATT 282105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412213238040