Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18 102 5e-17 seq107 93.3 3e-14 seq91 91.5 1e-13 >seq18 Length=819520 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| || ||||| || || || |||||| || |||||||||||||| Sbjct 141048 CCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGAC 140989 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || |||||||| | |||||||| || |||| Sbjct 140988 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGG 140929 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| | | || | || | |||||| | |||||| Sbjct 140928 ATACCTTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| |||||||| |||||||| |||||||| || || |||| ||||| || Sbjct 139894 ATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTG 139835 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||| || || |||| |||||||||||| | || | |||||| ||||| Sbjct 139834 CTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTC 139784 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| ||| || || || || || |||||||| || ||| Sbjct 140820 CCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAG 140761 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||| ||||||||||| | || Sbjct 140760 AGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGA 140701 Query 33643 ACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 140700 ATGCCTTCCTTGTC 140687 >seq107 Length=284601 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || || ||||||||||| ||||| || || |||| |||||||| Sbjct 96586 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCCTCCAATTG 96645 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || ||||||| ||||||||||| | || | |||||| ||||| |||||| Sbjct 96646 CTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGAATTTT 96705 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | || || | || | || || |||| || || |||| ||||| || || |||| Sbjct 96706 -GGCTTTGACGTTCTCAATCGTATCACTTGCCTCAACTTCAAGAGTGATAGTCTTGCCTG 96764 >seq91 Length=320879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || || ||| |||||| || |||||||| ||| | Sbjct 61453 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTG 61394 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || || || |||| |||| |||||||||||||| |||| ||||||||| || Sbjct 61393 AGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTC 61341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | |||||| || || ||| |||||| || ||| Sbjct 61814 AAAATCTGCATTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATG 61755 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||| ||| ||||| | || |||| || ||||||||||| |||| ||||||| Sbjct 61754 TTGTAGTCGCTGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGC 61695 Query 33631 TGATC 33635 || || Sbjct 61694 TGGTC 61690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698307360320