Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 111 4e-19 seq107 93.3 1e-13 seq91 86.0 1e-11 >seq18 Length=819520 Score = 111 bits (122), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| ||||| || || || || ||||| | || |||||| ||| ||||| | Sbjct 140830 TTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCCGACACGAT 140889 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||| ||||| || ||||| || ||||||| || | || Sbjct 140890 CGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAGCAGCGGCT 140949 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || |||||| |||| ||||| | || || ||||||||||| ||||||| Sbjct 140950 CATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAACATCCAGAA 141009 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || || ||| | || ||| | || || Sbjct 141010 AGAGTCGACGCTGCACTTGGTCTTGCGTCTGCG 141042 >seq107 Length=284601 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || || |||||||| | || |||||| ||| ||||| | || Sbjct 95655 AAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCCGACACCATTGAGAAC 95596 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || || || || || |||||| || | || || || Sbjct 95595 GTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATTTTT 95536 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || ||| | || |||||| |||||||||||||| Sbjct 95535 GCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAACATCCAGAAAGAGTCT 95476 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || ||| | || || Sbjct 95475 ACGCTGCATTTGGTCTTGCGTCTACG 95450 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || || || | || || || |||||||| | ||| || ||| Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTTAAGGCG 95815 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||||||| ||||||| || | || ||||||||||| ||| Sbjct 95814 AAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 95755 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || | ||||||||| ||||||| ||||| || || || Sbjct 95754 CAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAT 95695 Query 206374 CTTGT 206378 || || Sbjct 95694 CTGGT 95690 >seq91 Length=320879 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || |||||| |||||| || | || ||||| ||||||||| Sbjct 61660 AAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAG 61719 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || | ||| |||||| ||||||||||||| || |||||| Sbjct 61720 CAGCTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAAGAGTCCACCCTTCAC 61779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181799283105741