Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-21 seq59 118 2e-20 seq26 118 2e-20 seq164 109 8e-18 seq90 96.9 5e-14 seq156 95.1 2e-13 seq98 93.3 6e-13 seq80 93.3 6e-13 seq17 86.0 9e-11 seq4 86.0 9e-11 >seq6 Length=1030571 Score = 122 bits (134), Expect = 1e-21 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| || | | | | |||||||| | | Sbjct 709766 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACTG--GAGTC-TCCTCCAA---GGCG 709819 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||||||||||| || ||||||||||| |||| || |||| | | ||| | Sbjct 709820 ATGGCCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGCAGAGTCTTCG 709879 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| ||| | ||||||| ||| ||| | | ||||| ||||| ||||| || Sbjct 709880 CGCCTCTCGCAGTACAACAAGAAGTCCACCATCACCTCCCGCGAAATCCAAACCGCTGTC 709939 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| || || |||| ||||||||| || |||||||||| Sbjct 709940 CGACTTCTACTGCCCGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCA 709991 Score = 113 bits (124), Expect = 6e-19 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| |||||| || | | | | |||||||| | | Sbjct 485457 ATCTACAAGGTGTTGAAGCAGGTCCACCCCGACACTG--GAGTC-TCCTCCAA---GGCA 485404 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||||||||||| || ||||||||||| |||| || |||| | | ||| | Sbjct 485403 ATGGCCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGGATCGCCGCAGAGTCGTCG 485344 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| ||| | ||||||| || ||| | | ||||| ||||| ||||| || Sbjct 485343 CGCCTCTCGCAGTACAACAAGAAGTCTACCATCACCTCCCGCGAAATCCAAACCGCTGTC 485284 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| ||| || || || | ||||||||| || |||||||||| Sbjct 485283 CGACTTCTACTGCCCGGAGAGCTCGCTAAGCACGCCGTGTCGGAGGGCACCA 485232 Score = 109 bits (120), Expect = 8e-18 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| || |||||||| ||||| |||||||| ||||| || | | | | Sbjct 997250 TCGTACTCGATCTACATCTACAAAGTGCTGAAGCAGGTTCACCCTGACACTG--GAGTC- 997194 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | | ||| | ||||||||||| || ||||||||||| |||| || ||| Sbjct 997193 TCCTCCAA---GGCGATGGCCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATC 997137 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | ||| | ||||| ||| | ||||||| ||| || | ||||| Sbjct 997136 GCCGCAGAGTCGTCGCGCCTCTCGCAATACAACAAGAAGTCCACCATTACTTCCCGCGAA 997077 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 || || |||||||| || || | ||| ||| || || |||| |||||||| || || Sbjct 997076 ATTCAAACCGCCGTCCGACTCCTGTTGCCCGGAGAGCTCGCCAAACACGCCGTATCTGAA 997017 Query 725136 GGCACCA 725142 ||||||| Sbjct 997016 GGCACCA 997010 Score = 109 bits (120), Expect = 8e-18 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| || |||||||| ||||| |||||||| ||||| || | | | | Sbjct 1026742 TCGTACTCGATCTACATCTACAAAGTGCTGAAGCAGGTTCACCCTGACACTG--GAGTC- 1026686 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 |||||||| | | ||| | ||||||||||| || ||||||||||| |||| || ||| Sbjct 1026685 TCCTCCAA---GGCGATGGCCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATC 1026629 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | ||| | ||||| ||| | |||||| ||| ||| | ||||| Sbjct 1026628 GCCGCAGAGTCGTCGCGCCTCTCGCAATACAACAAAAAGTCCACCATCACTTCTCGCGAA 1026569 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 || || |||||||| || || | ||| ||| || || |||| |||||||| || || Sbjct 1026568 ATTCAAACCGCCGTCCGACTCCTGTTGCCCGGAGAGCTCGCCAAACACGCCGTATCTGAA 1026509 Query 725136 GGCACCA 725142 ||||||| Sbjct 1026508 GGCACCA 1026502 Score = 87.8 bits (96), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 263341 GGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTC 263400 ||||||||||| || ||||||||||| |||||| ||| ||||| ||||||||||| ||| Sbjct 235094 GGCCTCAAGACCGGTATGTACTATCTCCGCACCAAGCCGGCTGCTAACGCCATTCAGTTC 235153 Query 263401 ACCGTCGATCAGGCGA 263416 |||||||| ||| || Sbjct 235154 ACCGTCGACAAGGAGA 235169 >seq59 Length=417714 Score = 118 bits (130), Expect = 2e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||||||||||||| |||| | | | |||||||| | | Sbjct 173060 ATCTACAAGGTGCTGAAGCAGGTGCACCCCGACACCG--GAGTC-TCCTCCAA---GGCG 173113 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | || |||||||| || ||||||||||| |||| || |||| | ||| || Sbjct 173114 ATGGCCATTATGAACTCTTTCGTCAACGACATCTTCGAGCGGATCGCTGCTGAGTCCTCG 173173 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| | | | |||||| ||| ||| | || |||||||||||||| ||| Sbjct 173174 CGCCTCTCCCAATACAACAAAAAATCCACCATCACTTCACGTGAGATCCAGACCGCAGTG 173233 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || || ||||||| || ||||| || |||||||||| Sbjct 173234 CGACTTCTGCTGCCGGGGGAGCTGGCCAAACATGCCGTGTCTGAGGGCACCA 173285 >seq26 Length=693737 Score = 118 bits (130), Expect = 2e-20 Identities = 176/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| || |||||||||||||| |||||||| |||||| || | | | | Sbjct 85262 TCGTACTCGATCTACATCTACAAGGTGCTAAAGCAGGTTCACCCCGACACTG--GAGTC- 85318 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| | | ||| | ||||||||||| || ||||||||||| |||| || ||| Sbjct 85319 TCTTCCAA---GGCGATGGCCATCATGAACTCCTTCGTCAACGACATCTTCGAACGGATC 85375 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||| | ||||| ||| | |||||| ||| ||| | | ||||| Sbjct 85376 GCCGCCGAATCGTCGCGCCTCTCGCAGTACAACAAAAAGTCCACCATCACCTCCCGCGAA 85435 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| ||||| || || || | | | ||| || || |||| |||||||| |||||| Sbjct 85436 ATCCAAACCGCAGTCCGACTCTTGTTACCCGGAGAGCTCGCCAAACACGCCGTATCCGAG 85495 Query 725136 GGCACCA 725142 || |||| Sbjct 85496 GGTACCA 85502 >seq164 Length=195504 Score = 109 bits (120), Expect = 8e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2133579 GATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCAC 2133638 || |||||| | |||||||||||||||||||| || |||| || |||| |||| |||| Sbjct 50437 GACATTGACATCTTCTCCATGTGCGAGCACCATTTGGTGCCGTTCTTCGGGAAGGTCCAC 50496 Query 2133639 GTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGAC 2133698 ||||||||| ||||| | ||| || |||| ||||||||||| |||| ||||| || Sbjct 50497 GTGGGCTACTTGCCCAAGAACAAAGTCGTCGGACTGAGCAAGATTGCGCGTATCGTGGAG 50556 Query 2133699 ATGTT 2133703 || || Sbjct 50557 ATCTT 50561 >seq90 Length=323736 Score = 96.9 bits (106), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 |||||||||||||| | ||||||| |||||||||||| ||||||||||| | ||||| Sbjct 180680 CTGCTTGCCCATGGAGGCCTGGTAGGTGTTGCGCGGCGACTGGTTGTGGTCCGGGAACGG 180739 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCG 1601464 |||||| ||||||| | | || || || | |||||||| |||| Sbjct 180740 GATGATAGACGCGCTGACTCCGAGGATCATGGACGGGTGGATCTCG 180785 >seq156 Length=201976 Score = 95.1 bits (104), Expect = 2e-13 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1816124 CTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGC 1816182 |||||||| || ||||| || ||||||||||| || ||| | |||||||| ||||| Sbjct 25912 CTCTCCATGGATTTGATCAGGCGACGCTGGATGTAACC-GGTCTCAGCGGTCTTCACGGC 25970 Query 1816183 CGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAG 1816242 ||| || | ||| ||||| || ||||| || ||| ||||| | ||| || |||| Sbjct 25971 CGTATCAATCAGACCCTCACGACCGCCCATGGAGTGGAAAAAGAACTCTGACGGCGTGAG 26030 Query 1816243 GCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGGCGGCGGCACGGCCTCG-G 1816301 ||| | ||| ||||| ||| |||||||| ||||| ||| || ||| Sbjct 26031 ACCGGCCAGGTATGAGTTCTCCACGAAGCCGCGACTCTC------CGGACCGTAATCGTC 26084 Query 1816302 CGTGCCGGTA-GCAGCCCAGTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCA 1816360 |||| | | || | ||| ||||| | || || || |||| |||| ||||||| Sbjct 26085 CGTGATGAAATGCGG--CAGGGTGCGATGTCGGAACCCGAAGGGGATCCGCTTGCCCTCA 26142 Query 1816361 TTGCTCTGCTGGCCCACGCAGCCGCACATCTGGGTGATGTT 1816401 | ||||||| || || ||| || || ||||| |||||| Sbjct 26143 ACGTTCTGCTGTCCGACACAGGCGATCACCTGGGAGATGTT 26183 Score = 89.7 bits (98), Expect = 7e-12 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAG-GGCAC 1818127 ||| | |||||||| || ||| ||||||||||| ||| | ||| || | ||||| Sbjct 27989 ATGTTGAAGGGCGTGACAATCTCCGGAAAGGTGAGGTTCTGGGCGA-CTGTCCGCGGCAC 28047 Query 1818128 GCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTT 1818187 || |||| || || | | ||| ||||| ||||||| | |||||| | |||| Sbjct 28048 ACCGACCTGATCGATCCGCAGATTGGGATCGGGTGTGATGACTGTGCGCGCAGAGAAGTC 28107 Query 1818188 GACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT 1818243 |||||||||||||| ||||||||||| | || ||||||||||||| |||| Sbjct 28108 CACGCGCTTGCCCATCAGGTTGCCGCGGATGCGACCTTCCTTGCCCTTGAGACGCT 28163 >seq98 Length=303023 Score = 93.3 bits (102), Expect = 6e-13 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 ||||||| ||| || ||||| |||| | || ||||| || ||||||||||| | | Sbjct 281283 ACCTCTTCAACGCGATTGACACCATGCCTTGCGTCAGGAAGAAAGCCGACTGGGCACTCA 281342 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-T 1456203 ||||| | || | | | | || || || || || |||| | ||||||| || | Sbjct 281343 GCTGGATGAGCA-GCACCAACGCCAC-CTATGGAGAACGCATCGTGGCCTTTGCCTCGGT 281400 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 ||||| ||||| ||| ||| ||| | ||||||| |||||||| || || || || Sbjct 281401 GGAGGGGATCTTCTTCAGCGGCTCATTCGCCTCCATCTTCTGGCTCAAAAAACGGGGACT 281460 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 ||||||||| ||| || ||||| || | ||||||||||| || || Sbjct 281461 CATGCCCGG-CTTGACATTCAGCAATGAGCTCATCAGTCGCGATGAGGT 281508 Score = 86.0 bits (94), Expect = 9e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 || || || || || ||||| ||||| |||||||||||||||||||| || || | ||| Sbjct 281096 GAAGCGCGCTTCTTCTACGGATTCCAAATCGCCATCGAAAACATCCATTCGGAGATGTAC 281155 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 |||||||||||||||||| |||| ||| Sbjct 281156 AGCCTCCTGATCGACACCTACATCAAAGAC 281185 >seq80 Length=362415 Score = 93.3 bits (102), Expect = 6e-13 Identities = 166/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| ||||||||||| ||| | | ||| || |||| ||| |||| | Sbjct 328461 ATCTTCAAGGTCCTCAAGCAGGTTCACGC--GGACCA---GGGCATC-TCCGGCAAGGCG 328408 Query 724971 ATGTCGATCATGAACTCGTT-TGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||| ||||||||||| || |||| |||||| |||| || || ||| |||||||||| Sbjct 328407 ATGGACATCATGAACTCCTTCTGTCTG-GACATGTTCGAGCGGATTGGCGCCGAGGCCGG 328349 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || || || | |||| |||| ||| |||| || ||| ||| | | Sbjct 328348 TCGGCTAGCCCGGATGACCAAGAAACACACCATCTCGGCGCGGGACATCTCCACC-TCTT 328290 Query 725090 GC-GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | || | ||| || || ||| |||||| |||||||||||||||| Sbjct 328289 GCAAGCTGCTGATCCCCGGGGAGCTCTCCAAGCACGCTGTCTCCGAGGGCACCA 328236 >seq17 Length=826660 Score = 86.0 bits (94), Expect = 9e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 1818093 GGAAAGGTGAGCGTCTTGACGATCTCATA-GGGCACGCCCACCTCGTCAATGTCAATCTC 1818151 ||||||||||| |||| | || | ||| ||||| || || ||||| || | | Sbjct 716185 GGAAAGGTGAGGATCTTCGCCATAT-ATATCGGCACACCGACTTCGTCCATCCGGAGATT 716127 Query 1818152 GGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCATGCAATTGCC 1818211 |||||||| |||||||| | ||| || | |||||||| |||||||| | |||||| Sbjct 716126 CGGGTCGGGACTGATGACAGTGCGACCGCTGAAGTTGACCCGCTTGCCGTTAAGATTGCC 716067 Query 1818212 GCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCCCTTG 1818257 ||| | | ||| | ||| ||||| | ||||| | ||| ||||||| Sbjct 716066 GCGAAATCGGCCGTGCTTCCCCTTCAGCCGCTGCTCGAAGCCCTTG 716021 >seq4 Length=1074739 Score = 86.0 bits (94), Expect = 9e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1601360 TGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGG 1601419 |||||||||||||| | |||||| |||| ||||| | ||||||||| | || ||| || Sbjct 1020783 TGCTTGCCCATGGCGGATTGGTAGGTGTTACGCGGAGACTGGTTGTGATCGGGAAAGGGA 1020842 Query 1601420 ATGATGGACGCGCAGGCGCCCAGCATGA-GCAGCGGGTGGACCTCGACGTGCGT 1601472 ||||||||||||||| | || || || | | || || |||| ||| |||||| Sbjct 1020843 ATGATGGACGCGCAGACACCGAGAATCATGGAG-GGATGGATTTCGCAGTGCGT 1020895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177674141938202