Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq107 140 3e-28 seq91 120 3e-22 seq18 118 1e-21 seq92 84.2 2e-11 >seq107 Length=284601 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | ||| |||||||| | |||| ||| || || |||||||| || | | Sbjct 95444 CCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGAC 95503 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| || |||||||| || ||||| || | ||||||||||||| ||| Sbjct 95504 AACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 95563 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| |||||| ||| | | | | |||||| | ||||||| Sbjct 95564 ATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACC 95623 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||||| ||||| |||| ||||||||||| || ||||| Sbjct 95624 TCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||||| |||| |||| ||||| ||||| || Sbjct 96598 CTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAA 96657 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 |||| ||||||||| |||| ||||| | ||||||||| ||| ||| |||| Sbjct 96658 AATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCC-TGAATTTTGGCTT 96710 >seq91 Length=320879 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| ||||| ||| | ||| || |||| ||||||||||| || ||||| Sbjct 60832 TCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAG 60773 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||||| |||| | |||||| ||| |||||| ||| | | Sbjct 60772 ATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTC 60713 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | ||| || || | || ||||| || ||||||| ||| ||||| Sbjct 60712 TCAATTGTATCACTTGCTTCAACTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACG 60653 Query 35726 AATATCTGCATTCT 35739 || ||||||||||| Sbjct 60652 AAGATCTGCATTCT 60639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||| || | || ||| || ||||||||||| ||| Sbjct 61455 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGC 61396 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||||| |||| |||||||| || || ||||| |||| ||||||||||||| | Sbjct 61395 TGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61336 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | |||||| ||| |||||| ||| | | | | ||||| || | |||| Sbjct 61335 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCA 61276 Query 35688 CCTCCACCGTGATCGTTTTACCCGTC 35713 | || | || || || ||||| ||| Sbjct 61275 CTTCGAGGGTAATGGTCTTACCTGTC 61250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | | || | ||| | ||| ||||||||| |||||||| ||| Sbjct 62164 TCCACCACGCAGACGGAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCT 62105 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || | || ||||||||||| || ||||| |||| ||||||||||||| || Sbjct 62104 GAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 62045 Query 35629 AACGCTCTCCTTGTCCATGATCTT 35652 || | |||||| ||| |||||| Sbjct 62044 AATTCCCTCCTTATCCTGGATCTT 62021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||| || | || ||| || || |||||||| ||| Sbjct 61804 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 61745 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || ||||||||||| || ||||| |||| ||||||||||||| | Sbjct 61744 TGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61685 Query 35628 GAACGCTCTCCTTGTCCATGATCTT 35652 ||| | |||||| || |||||| Sbjct 61684 GAATTCCCTCCTTATCTTGGATCTT 61660 >seq18 Length=819520 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | | ||| ||||| || | ||| ||| || || ||||||||||||| Sbjct 141049 TCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGA 140990 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || || || | || ||||||||||| || ||||| || | |||||||||||||| || Sbjct 140989 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGG 140930 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| |||||| ||| | | | | ||||||| | |||||| Sbjct 140929 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||| | ||||| || || || |||| || || ||||| || ||||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATTC 140820 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||| | ||| | || || || || || |||||||||| Sbjct 140470 TTCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGG 140411 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || |||||| |||| ||||||||||| || || || || | ||||||||||||| || Sbjct 140410 ACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAG 140351 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | |||||||||| ||| || ||||| | || | | ||| || || | || | Sbjct 140350 GAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGA 140291 Query 35688 CCTCCACCGTGATCGTTTTACC 35709 | |||| ||| || || || || Sbjct 140290 CTTCCAGCGTAATTGTCTTGCC 140269 >seq92 Length=311103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||| ||||| || | ||| | |||| |||||||| || || ||||| Sbjct 304116 CTCCTTCTGAATGTTATAATCAGCGAGGGTCCTTCCGTCTTCCAGCTGTTTCCCGGCAAA 304057 Query 35605 TATCAACCGCTGCTGGTCCGAAGG 35628 ||||||||||||||||||| ||| Sbjct 304056 AATCAACCGCTGCTGGTCCGGAGG 304033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450785592778680