Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq91 132 5e-26 seq107 131 2e-25 seq18 120 3e-22 >seq91 Length=320879 Score = 132 bits (146), Expect = 5e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| |||| ||||| || || ||||||||||||||||| |||||||||| Sbjct 60870 TTCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGC 60811 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| || ||| || ||||| || || ||||| |||| ||||||||| || || | Sbjct 60810 TGAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 60751 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | ||| || | ||| | Sbjct 60750 GAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAA 60691 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT-TTGT 134718 | || || ||||| || || || || | ||| || ||||| || |||||| |||| Sbjct 60690 CTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATTCTTGT 60636 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| | ||| || ||||| || || |||||||||||||||| Sbjct 61455 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGC 61396 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | ||| || |||||||| || ||||| |||| ||||||||| || || | Sbjct 61395 TGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61336 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||| | |||| Sbjct 61335 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCA 61276 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | ||||| |||||||| ||||| || Sbjct 61275 CTTCGAGGGTAATGGTCTTACCTGT 61251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || |||||||| ||||||||||||| | |||| | || || Sbjct 62145 ACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCC 62086 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| ||||||||| || || || || || || || || || Sbjct 62085 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGG 62026 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | |||||| | ||||| ||||| |||||||| ||| Sbjct 62025 ATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTA 61966 Query 134685 CC 134686 || Sbjct 61965 CC 61964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| | ||| || ||||| || || || ||||||||||||| Sbjct 61804 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 61745 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | || || ||||| || || ||||| |||| ||||||||| || || | Sbjct 61744 TGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61685 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||| || || ||||| || | ||| || | |||| Sbjct 61684 GAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCA 61625 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 | ||||| |||||||| || || ||||||| Sbjct 61624 CTTCGAGGGTAATGGTCTTGCC---TAAAGTT 61596 >seq107 Length=284601 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| || | || ||||| || || || || ||||||||||| | |||| ||| | Sbjct 95453 AGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAAC-GTGCG 95511 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| |||||||| ||||| |||||||| | ||||||||| || || || || || || Sbjct 95512 GCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTC 95571 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| ||| ||||| || | |||||||| | |||||| || || || Sbjct 95572 CTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGT 95631 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| | ||||| || || |||||||| Sbjct 95632 GATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq18 Length=819520 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| ||||| || || || || |||||||| ||| | ||| | Sbjct 141039 AGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGG 140980 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| |||||||| | |||||||| || ||||| || ||||| Sbjct 140979 CCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCC 140920 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| || | |||||||| | |||||| ||||| || Sbjct 140919 TTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTG 140860 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| | || || || |||||||||||| Sbjct 140859 ATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| || || || || |||||||| || ||||||||||| Sbjct 140822 TTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 140763 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || | ||| || || || || ||||| ||||||||||| || | Sbjct 140762 AGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGG 140703 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCC 134663 | |||||||| || ||||| || || |||| || | |||| || || | |||| Sbjct 140702 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATCGTATCACTGGCTTCC 140644 Query 134664 ACGTCGAGAGTAATGGTTTTACC 134686 || ||||| ||||| || || || Sbjct 140643 ACTTCGAGTGTAATAGTCTTGCC 140621 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || ||||| ||||| |||||||||||| Sbjct 139917 CCGCCACGGAGACGGAGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAG 139858 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || | ||| || || || || |||| |||||||||||| || || Sbjct 139857 AGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGA 139798 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 || ||||| || || || ||||| Sbjct 139797 ATACCTTCCTTGTCCTGGATTTT 139775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389422860920