Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq91 143 2e-29 seq107 140 3e-28 seq18 82.4 6e-11 >seq91 Length=320879 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | |||| || | ||| | || || || |||||||||||||||||||| Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || ||||| | || |||||||| || ||||| || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| || | | | || | || || | ||||||||| Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACT 60689 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||||||||||| ||||| ||||| ||||| Sbjct 60688 TCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || ||||| ||||| ||||||||||| Sbjct 61453 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTG 61394 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| |||||||| ||||| | || |||||||| || ||||| || Sbjct 61393 AGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 61334 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| || | | | || | ||||| | || || ||| Sbjct 61333 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACT 61274 Query 27201 TCTAGAGTTATAGATTTGCCCGTC 27224 || || || || | || || ||| Sbjct 61273 TCGAGGGTAATGGTCTTACCTGTC 61250 >seq107 Length=284601 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | ||||| |||||||| | |||||| ||||| || || |||||||| Sbjct 95443 GCCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGA 95502 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| |||| |||||||| || || || ||||||||||||| || ||||| || Sbjct 95503 CAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGG 95562 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| ||||| || | | | || | ||||| | ||||| || Sbjct 95563 GATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCAC 95622 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || ||||| ||||||||||||||||||||| || Sbjct 95623 CTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCATACCT 95674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| | | | || | ||||||||||| || || Sbjct 96051 GTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCGAGCTGCTTGCCA 96110 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| ||||| || ||||| || | ||| || ||||| ||||||| || Sbjct 96111 GCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTG 96170 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 | |||| | |||||| |||| || ||||| || || |||| ||||| Sbjct 96171 ACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGGGTAATAGTCTTGCC 96220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||||| |||| ||||| ||| | || || || || || || ||||| || | Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | ||||||||||| || |||||||| Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 27141 ACACCCTCTTTATCGGCGATCTT 27163 | || || || || |||||| Sbjct 95792 ATTCCTTCCTTGTCTTGGATCTT 95814 >seq18 Length=819520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||| ||| || | | || ||||||| ||||| || || Sbjct 140438 GTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCA 140379 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| || ||||| || | ||||| || || ||| ||| ||| Sbjct 140378 GCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTC 140319 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 | |||| | || || | || || ||||| || || || | ||||| Sbjct 140318 ACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAATTGTCTTGCC 140269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424927040800152