Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 7e-12 >seq3 Length=1595396 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 ||||| || |||||||| ||||||||| |||||||||||| ||||| || | |||| Sbjct 353414 AGACGGGTGCCAAACTGGCCACACGGCAAAAGAAGATTGATGTTGTTACTGCCGACGTAG 353473 Query 168533 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 168592 || | ||||| ||| || ||| | || |||||||| ||||| || || || Sbjct 353474 TCTTGCGCCAGACCGACGATGGTGGACTGAAGGGAGACTTCGCCGTGATGATAAGCCGAT 353533 Query 168593 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 168627 ||||| || || | |||| ||||| ||||| || Sbjct 353534 TTCTCGGCCACCGAACCCGCTAACTGGGCCACCTT 353568 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 168473 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 168532 ||||| || |||||||| ||||||||| |||||||||||| ||||| || | |||| Sbjct 361692 AGACGGGTGCCAAACTGGCCACACGGCAAAAGAAGATTGATGTTGTTACTGCCGACGTAG 361751 Query 168533 TCATTCGCCA-ACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACT 168591 || | ||||| | ||| || | | | ||| |||||||| ||||| || || || | Sbjct 361752 TCTTGCGCCACAACCGACGATGGGGGAC-TGAGGGAGACTTCGCCGTGATGATAAGC-CG 361809 Query 168592 CTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTT 168627 ||||| || || | |||| ||||| ||||| || Sbjct 361810 ATTCTCGGCCACCGAACCCGCTAACTGGGCCACCTT 361845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250439830040