Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq91 150 5e-31 seq107 145 2e-29 seq18 143 8e-29 seq32 132 1e-25 >seq91 Length=320879 Score = 150 bits (166), Expect = 5e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || || || ||||||||||| || || | || || || || Sbjct 60853 AGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCC 60794 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| |||||||| ||||| ||||| || || |||||||| || |||||| Sbjct 60793 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 60734 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | |||| || ||||||||||||||||| ||| Sbjct 60733 TGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGTGTAATCGTC 60674 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || || ||||||||| Sbjct 60673 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 >seq107 Length=284601 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| ||| ||| || ||||||||||| || || || || || || || || || || || Sbjct 95460 AGACCAA-ATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCC 95518 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || |||||||| || ||||| ||||| || ||||| || || || |||||| Sbjct 95519 TCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCC 95578 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || ||||| | || || | ||| || |||||||| | ||| Sbjct 95579 TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTC 95638 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||| ||||| || ||||| Sbjct 95639 TTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 143 bits (158), Expect = 8e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | ||||||||||| || || ||||| || || || || ||||| Sbjct 96559 CATGCCTCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 96618 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || || | ||| || || || || || || || |||||||| || Sbjct 96619 CGAGAGAGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGG 96678 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||||||||| ||||| || || ||||||| |||| || || Sbjct 96679 AGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCACTTGCCTC 96738 Query 140687 AACTTCAAGTGTAACTGTCTTTCC 140710 ||||||||| || | ||||| || Sbjct 96739 AACTTCAAGAGTGATAGTCTTGCC 96762 >seq18 Length=819520 Score = 143 bits (158), Expect = 8e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || ||||| || || || ||||| || ||||| ||||| Sbjct 140472 CATTCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATC 140413 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| || || ||||| ||||| || || Sbjct 140412 GGACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGG 140353 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||| || || ||||| ||||| || || ||||| || |||| |||| || || Sbjct 140352 AGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTC 140293 Query 140687 AACTTCAAGTGTAACTGTCTTTCC 140710 ||||| || |||| |||||| || Sbjct 140292 GACTTCCAGCGTAATTGTCTTGCC 140269 >seq32 Length=605290 Score = 132 bits (146), Expect = 1e-25 Identities = 357/541 (66%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAAT 349542 || |||| ||| | || || || || || || || |||| | || || ||||| || || Sbjct 354979 AAGCCAAAGATTCAAGTGGAGTACAAGGGAGAGACGAAAA-ACTTCTTCCCCGAGGAGAT 354921 Query 349543 TTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGT 349602 || || ||||| | | || |||||||| | ||| ||||| || | || | || || Sbjct 354920 CTCCTCCATGGTGCTCATCAAGATGAAGGAGACTGCCGAAGCGTACCTCGGCAAGACTGT 354861 Query 349603 AACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAA 349662 || | || || | || || || ||||| || ||||| | || || || || || Sbjct 354860 TACAAACGCCGTGGTCACCGTGCCGGCCTACTTCAATGACTCTCAACGACAGGCCACCAA 354801 Query 349663 AGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGC 349722 || || || ||| || || | || || || | || || || || || || || || Sbjct 354800 GGACGCCGGAGTCATCGCCGGCCTCAACGTGCTCCGCATCATCAACGAGCCGACGGCCGC 354741 Query 349723 AGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGA 349782 || || || || || || || | | || || | ||| || | || || ||||| Sbjct 354740 GGCCATCGCCTACGGACTCGACCAGAAGATTGGCGGGGAACGGAACGTGCTCATCTTTGA 354681 Query 349783 TTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGT 349842 || || || ||||| || ||||| || | || || | || || || || ||||| || Sbjct 354680 CTTGGGCGGCGGTACCTTCGATGTGTCCATCCTCACCATCGAGGACGGCATCTTTGAGGT 354621 Query 349843 TAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || | || || ||||| || ||||| || || || || ||||| || || | || Sbjct 354620 CAAGTCCACGGCCGGTGACACCCATCTCGGAGGGGAGGACTTTGACAACCGCATGGTGAA 354561 Query 349903 GCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAG 349961 || || || | || |||||||| ||||| || | || || ||| || ||| | | Sbjct 354560 CCACTTCGTGCAGGAGTTTAAGCG-CAAGCACAAGAAGGACATCTCAGACAACCCTCGTG 354502 Query 349962 CAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCC 350021 | | ||||| || | ||||||||||||||||| |||||| || | || || | |||| Sbjct 354501 CCCTCCGTCGTCTCCGGACTGCGTGTGAACGTGCAAAGCGTACCCTCTCCTCGAGCACCC 354442 Query 350022 A 350022 | Sbjct 354441 A 354441 Score = 111 bits (122), Expect = 5e-19 Identities = 347/532 (65%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 ||| | || || || ||||| || || ||||| || || ||||| || || || || || Sbjct 339811 ATTCAAGTGGAGTACAAAGGAGAGACGAAAACC-TTCTTCCCCGAGGAGATCTCCTCCAT 339753 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 ||| | | ||||||||||| | ||| ||||| || | || | || || || | || Sbjct 339752 GGTGCTCTTCAAAATGAAGGAGACTGCCGAAGCGTACCTCGGCAAGACTGTTACAAACGC 339693 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 || | || || || ||||| || || || | || || || || || || || || Sbjct 339692 CGTGGTCACCGTGCCGGCCTACTTCAACGACTCTCAACGACAGGCCACCAAGGACGCCGG 339633 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 ||| || || | || || || | || || || || | || || || || || | Sbjct 339632 AGTCATCGCTGGCCTCAACGTGCTCCGCATCATCAACGAGTCGACGGCCGCGGCCATCAC 339573 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 || || || || | | || || | ||| || | || || ||||| || || || Sbjct 339572 CTACGGACTCGACCAGAAGATTGGCTGGGAACGGAACGTGCTCATCTTTGACTTGGGCGG 339513 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||| ||| || ||| | | || || | || || || || |||| || || | || Sbjct 339512 CGGTAGTTTCGACGTAACTATCCTCACCATCGAGGACGGTATCTTTGGGGTCAAGTCTAC 339453 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 || || || | ||||| || || || || || || ||||| | || ||||||| Sbjct 339452 GGCCGGAGACTCCCATCTCGGAGGGGAGGACTTCGACAATCGCATGGTGAACTATTTTGT 339393 Query 349912 TAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCGTC 349970 | || || ||||| ||||| || | || || |||||| ||| | || | |||| Sbjct 339392 GCAGGAGTTCAAGCG-CAAGCACAAGAAGGACATCTCAGATAAGCCTCGTGCCCTCCGTC 339334 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCA 350022 | || | ||||||||||||||||| |||||| || | || || | ||||| Sbjct 339333 GTCTCCGGACTGCGTGTGAACGTGCAAAGCGTACCCTCTCCTCGAGCACCCA 339282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515226812426063