Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 129 6e-25 seq3 89.7 6e-13 seq98 82.4 8e-11 >seq6 Length=1030571 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 ||||||| |||||||| ||||||||||||||||| || | || || || || ||||| Sbjct 233075 CGTTCGCAATCTACCTAGAGCCGTGGCACGCCGATGTTTTTGACTTCCTGGATCTGCGCA 233134 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCC 53685 |||| || | || ||| ||| ||| ||||| |||| ||| ||||| ||| | || Sbjct 233135 AGAATACCGGCGTAGAGGAGCAGCG-TGCTCGTGATTTGTTCTAC-GCTCTCTGGGTGCC 233192 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 ||| |||||||||| |||||||||| |||||| |||| ||||||||| ||| | || Sbjct 233193 GGATCTCTTCATGCGTCGGGTGGAGAAGTCCGAGGACTGGTGCCTGATGTGTCCGCATGA 233252 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 | | |||||| | | ||||| || ||||| || | | | ||||| Sbjct 233253 GAGTCCCGGCTTGGCCGATGTCTGGGGCGAGGAATTCGATGCGCTGTAT 233301 >seq3 Length=1595396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 175/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||| || ||||| || || || || |||||||| Sbjct 353372 GTGAAGATGTAACGGGGACTGGCGCTGTCTTTGCCGCCCTGAAGACGGGTGCCAAACTGG 353431 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| | ||| || || |||| |||||| ||| ||| | | || |||| | || Sbjct 353432 CCACACGGCAAAAGAAGATTGATGTTGTTACTGCCGACGTAGTCTTGCGCCAGACCGACG 353491 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||| ||| || |||| ||||| ||||| |||| | ||| || | | ||| Sbjct 353492 ATGGTGGACTGAAGGGAGACTTCGCCGTGATGATAAGCCGATTTCTCGGCCACCGAACCC 353551 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || ||||| |||||||| | ||| | | ||| || |||| ||| |||||| Sbjct 353552 GCTAACTGGGCCACCTTGACTTCCTTTCTGTCGTTACGAAGGAAGCAGGTGTAGATCACC 353611 Query 152269 TTGCGCTGGGATGGTTTCA 152287 || |||||| |||||||| Sbjct 353612 TTTCGCTGGCCTGGTTTCA 353630 >seq98 Length=303023 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||||| || || ||||| ||||| || |||||||| ||||| || |||| ||||||||| Sbjct 282185 CTTTGCGTACTCTCCGACGCGCTTCTCGAAAAAGTTTGTCTTTCCCTCCAGCGAGATGTT 282126 Query 74516 CTCCATCCAGTCGAAAGGGTTCT 74538 |||||| ||||||| || |||| Sbjct 282125 CTCCATGAAGTCGAACGGATTCT 282103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206280075800