Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq91 205 1e-47 seq107 179 4e-40 seq18 174 2e-38 seq3 87.8 2e-12 seq92 82.4 9e-11 >seq91 Length=320879 Score = 205 bits (226), Expect = 1e-47 Identities = 185/230 (80%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| ||||| ||||| ||||| || | Sbjct 60641 AATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGCAAG 60700 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | ||||| || || ||||| |||||||||||||| || ||||| Sbjct 60701 TGATACAATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCA 60760 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 ||||||||| || ||||| || ||||| || ||||| | ||| ||||| ||| ||||| | Sbjct 60761 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGC-GACTACA 60819 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | |||||||||||||| || ||||| ||| ||||||| ||||| ||| Sbjct 60820 ATATTCAAAAGGAATCCACCCTCCATCTCGTCCTGCGTCTCCGCGGAGGA 60869 Score = 159 bits (176), Expect = 4e-34 Identities = 158/202 (78%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| ||||| || || || ||| || |||| | |||| || | |||||||| Sbjct 61964 GGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGCTAAG 62023 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| |||||||||||||| || |||||||||||||| || ||||| || ||||| Sbjct 62024 ATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 62083 Query 27553 CTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 || ||||||| || ||||| ||| ||||| || |||||||||| || || || ||||| Sbjct 62084 CTGGAGGATGGCCGCACCCTCAGC-GACTACAACATCCAAAAGGAGTCTACCCTCCATCT 62142 Query 27612 AGTCTTGCGTCTTCGCGGTGGA 27633 ||| | ||||| || |||||| Sbjct 62143 TGTCCTCCGTCTGCGTGGTGGA 62164 Score = 150 bits (166), Expect = 2e-31 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| ||||| || || || ||| || |||||| |||| ||| | ||||| || Sbjct 61603 GGCAAGACCATTACCCTCGAAGTGGAGGCAAGTGATACAATTGAGAATGTCAAGGCCAAG 61662 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || || |||||||||||||| || |||||||||||||| || ||||| || ||||| Sbjct 61663 ATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 61722 Query 27553 CTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 || ||||||| || ||||| ||| ||||| || |||| || || ||||| ||||| | Sbjct 61723 CTGGAGGATGGCCGCACCCTCAGC-GACTACAACATCCAGAAAGAGTCCACCCTTCACTT 61781 Query 27612 AGTCTTGCGTCTTCGCGGTGGA 27633 || | ||||| || |||||| Sbjct 61782 GGTGCTCCGTCTGCGTGGTGGA 61803 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| || || || ||| || |||| | |||| || | ||||| Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGCC 61310 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| ||||||||||| || || |||||||||||||| || ||||| || || Sbjct 61311 AAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAA 61370 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || || || | || ||||| ||| ||||| || | || || || ||||| ||||| Sbjct 61371 CAGCTGGAAGACGGCCGAACCCTCAGC-GACTACAACATTCAGAAAGAGTCCACCCTTCA 61429 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || | ||||| || |||||| Sbjct 61430 CTTGGTGCTCCGTCTGCGTGGTGGA 61454 >seq107 Length=284601 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||||| ||||| ||||| || || |||||||| || | Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 95610 GACACCATTGAGAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 95551 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| |||||||| | || || | ||||||| || Sbjct 95550 CAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAAC 95491 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || ||| | ||||||||||| || ||||| Sbjct 95490 ATCCAGAAAGAGTCTACGCTGCATTTGGTCTTGCGTCTACGGGGTGG 95444 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||| | ||||||||||| |||||||| |||||| || |||||| |||| || | || Sbjct 96768 CTTCCAGGCAAGACTATCACTCTTGAAGTTGAGGCAAGTGATACGATTGAGAACGTCAAA 96709 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||||||||||||||| || |||||||| || |||||||| || ||||| || || Sbjct 96708 GCCAAAATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGG 96649 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 |||||| | ||||| | ||| || || | || || || |||| ||||| ||||| || Sbjct 96648 AAGCAATTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTC 96589 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || | ||||| || || || Sbjct 96588 CATCTTGTTCTCCGTCTCCGTGGAGG 96563 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27425 CGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 || |||| || ||||| ||||| |||||||| ||| || ||| | |||| |||| | | Sbjct 95879 CGGTTACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTTA 95820 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || || |||||||| ||||| || || |||||||||||||| || || || | Sbjct 95819 AGGCGAAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCG 95760 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | ||||| |||||||| | |||||||| | || || || |||| ||||| || || | Sbjct 95759 GCAAGCAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCC 95700 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || ||||||| ||||| || Sbjct 95699 TCCATCTGGTACTGCGTCTGCGCGGAGG 95672 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27425 CGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGA 27484 || || | |||||||||||||| || || || ||| | |||| | |||| |||| | | Sbjct 96228 CGGTTGCAGGCAAGACTATTACCCTCGAAGTAGAGGCCAGTGACACTATTGAAAATGTCA 96169 Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || || ||||| ||||| || || ||||| ||||||||||| || ||||| |||| Sbjct 96168 AGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGCGCCTCATTTTCGCTG 96109 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | ||||| ||||| |||| || ||||| ||||||| || |||| || || || |||| Sbjct 96108 GCAAGCAGCTCGAAGATGGCCGAACCCTCTCAGACTACAACATCCAGAAAGAGTCGACTC 96049 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||| | || || || ||||| Sbjct 96048 TCCATCTCGTCCTCCGACTCCGTGGTGG 96021 >seq18 Length=819520 Score = 174 bits (192), Expect = 2e-38 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| ||||| || || || ||| || |||||| || | |||| ||||||| ||| Sbjct 140269 GGCAAGACAATTACGCTGGAAGTCGAGGCAAGTGATACGATCGAAAATGTGAAGGCCAAA 140328 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct 140329 ATCCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAG 140388 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || || | || ||||| | || || ||| |||| || ||||| || || ||||| Sbjct 140389 CTGGAAGACGGCCGAACCCTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCATCTC 140448 Query 27613 GTCTTGCGTCTTCGCGGTGGA 27633 || | ||||| || |||||| Sbjct 140449 GTGCTCCGTCTCCGTGGTGGA 140469 Score = 152 bits (168), Expect = 6e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||||||||| ||||| |||||||| || || ||||| || | Sbjct 140821 AATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTC 140880 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | ||||| || || || |||||||| || || || || ||||| Sbjct 140881 CGACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCA 140940 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || ||||||||||| ||||| || ||||||| || || || | || || || Sbjct 140941 GCAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAA 141000 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || || || || || | ||||||||||| || |||||| Sbjct 141001 CATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGGA 141049 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||| | || ||||| || || || || |||||| || |||||| || | ||| | ||| Sbjct 139712 CTTCCAGGTAAGACCATCACCCTCGAAGTTGAGGCAAGTGATACGATCGAAAACGTCAAG 139771 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| ||||||||||| || |||||||| || ||||||||||| || || || || Sbjct 139772 GCCAAAATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGA 139831 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| | ||||| | ||| || || | ||||| || ||||||| ||||| ||||| Sbjct 139832 AAGCAGTTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAACTCTC 139891 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| | ||||| || || || Sbjct 139892 CATCTCGTCCTCCGTCTCCGTGGCGG 139917 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||||||||| || || || || | |||||| |||| ||| | ||||| || Sbjct 140621 GGCAAGACTATTACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACGTCAAGGCCAAG 140680 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || || |||||||| || ||||| || || |||||||| | || || || || ||||| Sbjct 140681 ATCCAAGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGCAG 140740 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 | || || | || ||||| | ||||| || |||| |||||||| || || ||||| Sbjct 140741 TTGGAAGACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATCTG 140800 Query 27613 GTCTTGCGTCTTCGCGGTGGA 27633 || | ||||| || || ||| Sbjct 140801 GTGCTCCGTCTGCGTGGAGGA 140821 >seq3 Length=1595396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 32053 AAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCG 32112 |||||||| ||| | |||| | ||||| ||| || |||| ||||| |||||||| | Sbjct 353568 AAGGTGGCCCAGTTAGCGGGTTCGGTGGCCGAGAAATCGGCTTATCATCACGGCGAAGTC 353509 Query 32113 TCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 || || ||| |||||| ||| || || || ||| ||||| || ||| | || Sbjct 353508 TCCCTTCAGTCCACCATCGTCGGTCTGGCGCAAGACTACGTCGGCAGTAACAACATCAAT 353449 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGC 32232 | || ||| | ||| |||||||| ||||| || || ||||| || || || Sbjct 353448 CTTCTTTTGCCGTGTGGCCAGTTTGGCACCCGTCTTCAGGGCGGCAAAGACAGCGCCAGT 353389 Query 32233 TCCCGTTACATCTTCACC 32250 ||||||||||||||||| Sbjct 353388 CCCCGTTACATCTTCACC 353371 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 31204 ATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTT 31263 ||||||||||| || ||||| ||| ||||| || | | || || |||||||| | Sbjct 354728 ATTCCGAAGCTGGAGGACGCTAACGATGCCGGCACAAAGCACTCTGACAAGTGCACGTTG 354669 Query 31264 ATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGG 31323 ||| | || || || |||||||| |||||||| | || | || || ||||| || ||| Sbjct 354668 ATTCTGACGGAAGGAGACTCGGCCAAGGCGCTGGTCGTTTCCGGTTTCAGTGTCGTCGGG 354609 Query 31324 CGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGC--CT 31381 ||| | || ||| || || || | || || || | | ||||| ||||| || || Sbjct 354608 CGCGACAAGTACGGCGTCTTCCCCTTGCGCGGTAAACTGTTGAACGTCCGTGATGCAACT 354549 Query 31382 CCGTTAAACAGGT 31394 ||| || ||||| Sbjct 354548 CCG--AAGCAGGT 354538 >seq92 Length=311103 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| ||||| ||||||||||| | |||||||| || || || || || || | | Sbjct 304027 GGAATCCCTCCGGACCAGCAGCGGTTGATTTTTGCCGGGAAACAGCTGGAAGACGGAAGG 304086 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || || ||||| | || ||||| || || || ||||| ||| |||| || ||| Sbjct 304087 ACCCTCGCTGATTATAACATTCAGAAGGAGTCGACCCTCCATCTCGTCCTGCGCCTCCGC 304146 Query 27628 GGTGG 27632 || || Sbjct 304147 GGCGG 304151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300269861520