Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq107 113 3e-20 seq91 98.7 6e-16 seq18 95.1 8e-15 seq92 86.0 4e-12 >seq107 Length=284601 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| || || ||| || || ||||| || ||||| | || || Sbjct 95453 AGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGG 95512 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | |||||| |||||||| || | |||||| Sbjct 95513 CCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCC 95572 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGG 34666 || || |||||| | || ||| | ||| ||||| ||| ||||| || | | Sbjct 95573 TTATCCTGAATCTTT-GCCTTGACGTTCTCAATGGTGTCGGAAGCT-TCCACCTCAAGTG 95630 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| |||||||| | |||||||||||| || ||||| Sbjct 95631 TGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| |||||| || |||||| || ||||| ||||| || || || || Sbjct 95681 AGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTACGG 95740 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| ||||||||||| | ||| ||| Sbjct 95741 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCTTCC 95800 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 95801 TTGTCTTGGATCTT 95814 >seq91 Length=320879 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | |||||| ||| ||||||||||| || || || || || || Sbjct 60859 AGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGA 60800 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | |||||| |||||||| || | ||||||| Sbjct 60799 CCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCC 60740 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || || |||| || | || ||| | |||||| || | ||| || ||||| | | Sbjct 60739 TTATCCTGGATC-TTGGCCTTGACGTTCTCAATTGTATCACTTGCT-TCAACTTCAAGTG 60682 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || || || | || ||||| || |||||||| Sbjct 60681 TAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 >seq18 Length=819520 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||| || || ||||| ||||| || || || || Sbjct 141039 AGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGG 140980 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| ||||||||||| | || ||| Sbjct 140979 CCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCC 140920 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || ||| | || ||||| ||| ||||| || | | Sbjct 140919 TTGTCTTGGATC-TTCGCCTTGACGTTCTCGATCGTGTCGGAAGCT-TCCACCTCGAGTG 140862 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| | ||| || |||||||| ||||| Sbjct 140861 TGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||| || || || || || || ||||| || || ||||| Sbjct 140459 AGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGG 140400 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || || || || | |||||| |||||||| || | ||||||| Sbjct 140399 CCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCC 140340 Query 34609 TTGTC 34613 ||||| Sbjct 140339 TTGTC 140335 >seq92 Length=311103 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| || | |||||| || |||||| |||||||||||||| | Sbjct 304151 CCGCCGCGGAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCAGCG 304092 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | ||||||| || ||||| |||||||| || || ||||| |||||||| || Sbjct 304091 AGGGTCCTTCCGTCTTCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCGGAGGG 304032 Query 34600 ACTCC 34604 | ||| Sbjct 304031 ATTCC 304027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724149375093