Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 143 2e-29 seq107 127 2e-24 seq91 109 5e-19 >seq18 Length=819520 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||| ||| |||| || || || |||||| | ||| Sbjct 140822 ATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCC 140881 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || |||||||| ||||| || || || || || Sbjct 140882 GACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAG 140941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || |||| || | || | |||||||||||| Sbjct 140942 CAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 141001 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || |||||||| | || ||||| |||||| |||||||||| Sbjct 141002 ATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | ||||| || ||||| || | || |||| || | || || ||| Sbjct 140269 GGCAAGACAATTACGCTGGAAGTCGAGGCAAGTGATACGATCGAAAATGTGAAGGCCAAA 140328 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || || ||||| || || || || || || || |||||| | || | ||| ||||| || Sbjct 140329 ATCCAGGACAAGGAGGGAATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAG 140388 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||| | ||| | ||||||||||| || || || || |||||| | ||| | Sbjct 140389 CTGGAAGACGGCCGAACCCTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCATCTC 140448 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||| | || ||||| || Sbjct 140449 GTGCTCCGTCTCCGTGGTGGAAT 140471 >seq107 Length=284601 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| |||| ||||||||||| || | || ||||||||| |||||| ||| Sbjct 96762 GGCAAGACTATCACTCTTGAAGTTGAGGCAAGTGATACGATTGAGAACGTCAAAGCCAAA 96703 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| ||||| ||||| || || || ||||| ||||| | || | ||| || || ||| Sbjct 96702 ATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGGAAGCAA 96643 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 ||||| ||| || || | || ||||||||||| || |||||||| ||| | ||| | Sbjct 96642 TTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTCCATCTT 96583 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | ||| | || || ||||| Sbjct 96582 GTTCTCCGTCTCCGTGGAGGCAT 96560 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | ||||| ||||| || || | || ||| ||||||| | || || Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTTAAGGCG 95815 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || || || || || |||||| | || | ||||||||| Sbjct 95814 AAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 95755 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | || ||||||||||| || |||||||||||| | ||| Sbjct 95754 CAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAT 95695 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||| |||| || || || Sbjct 95694 CTGGTACTGCGTCTGCGCGGAGGTAT 95669 >seq91 Length=320879 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| |||||| | ||||| |||||||| ||| | Sbjct 60642 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGCAAGT 60701 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || || || || || || || || || || Sbjct 60702 GATACAATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAG 60761 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || |||| ||| || ||| | ||| ||||| Sbjct 60762 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGCGACTACAAT 60821 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||| | ||| | || ||||| | || || || || Sbjct 60822 ATTCAAAAGGAATCCACCCTCCATCTCGTCCTGCGTCTCCGCGGAGGAAT 60871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27011 GACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACA 27070 ||| || ||| | ||||| || |||||||| | ||| | ||||||| ||||| Sbjct 61250 GACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACGTCAAGGC 61309 Query 27071 AAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 || || || || || || || || || || || || |||||| | || | ||||| || Sbjct 61310 CAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 61369 Query 27131 ACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 ||| |||||||| | ||| | ||| ||||||||||| || ||||| ||| | || Sbjct 61370 ACAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCA 61429 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| |||| ||||| || Sbjct 61430 CTTGGTGCTCCGTCTGCGTGGTGGAAT 61456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434910674761920