Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq18 113 3e-20 seq107 89.7 4e-13 >seq18 Length=819520 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || || ||||| ||| ||| | || || ||| | Sbjct 140821 AATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTC 140880 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | || ||||| || || ||||| |||||| | ||| ||| Sbjct 140881 CGACACGATCGAGAAC--GTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGAC 140938 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| ||| | |||||||| || || || |||| || | |||| ||||||||||| Sbjct 140939 CAGCAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTAC 140998 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||| || |||| ||||| |||||| |||| || || Sbjct 140999 AACATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 >seq107 Length=284601 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || || || || || ||| |||| || ||| || Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || ||||| ||| || || || || ||| | || ||| | Sbjct 95610 GACACCATTGAGAAC--GTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACC 95553 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || || | || |||| |||| ||||| || |||| Sbjct 95552 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACA 95493 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| |||||| || |||||||||| |||||| | || || ||| Sbjct 95492 ACATCCAGAAAGAGTCTACGCTGCATTTGGTCTTGCGTCTACGGGGTGGC 95443 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| ||||| |||||| |||| ||| ||||| ||| | ||||| Sbjct 96714 GTCAAAGCCAAAATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTC 96655 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || || |||||||| |||| || | | || |||||||||||||| || ||| | Sbjct 96654 GCGGGGAAGCAATTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCC 96595 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || | ||| | ||| | ||| | ||||| ||| Sbjct 96594 ACCCTCCATCTTGTTCTCCGTCTCCGTGGAGGC 96562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856237019267