Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18 156 1e-32 seq107 145 2e-29 seq91 136 9e-27 seq92 93.3 1e-13 >seq18 Length=819520 Score = 156 bits (172), Expect = 1e-32 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| || || |||||||| |||||||| ||||| | || || | ||||| || Sbjct 141031 GACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTC 140972 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||||||| || || || || || || ||||| || || | ||||||||||| || Sbjct 140971 CAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTG 140912 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || ||||| ||||| ||||| || ||| |||||||| ||||| ||||| Sbjct 140911 GATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTT 140852 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| ||||| | |||||| Sbjct 140851 CCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 138 bits (152), Expect = 3e-27 Identities = 144/188 (77%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| || |||||||||||||| || || | || |||| || || Sbjct 139902 AGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCC 139843 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || || || ||||||| |||||||||||| Sbjct 139842 TCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 139783 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || ||||||||||| || ||| ||| ||||| ||||| ||||| Sbjct 139782 TGGATTTTGGCCTTGACGTTTTCGATCGTATCA---CTTGCCTCAACTTCGAGGGTGATG 139726 Query 211080 GTCTTTCC 211087 ||||| || Sbjct 139725 GTCTTACC 139718 Score = 123 bits (136), Expect = 6e-23 Identities = 141/188 (75%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || ||||| ||||| || ||||| | ||||| | || ||| Sbjct 140453 AGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCT 140394 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| ||||| || || || || ||||| ||||||| ||| ||||||||| Sbjct 140393 TCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC 140334 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || ||||| |||||||| || ||| ||| || || || || || || Sbjct 140333 TGGATTTTGGCCTTCACATTTTCGATCGTATCA---CTTGCCTCGACTTCCAGCGTAATT 140277 Query 211080 GTCTTTCC 211087 ||||| || Sbjct 140276 GTCTTGCC 140269 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || || || || || || || || |||||||| || || | || Sbjct 140818 TCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAGAG 140759 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||||| |||||| || |||||||| | ||| || || || || |||| Sbjct 140758 GGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGAAT 140699 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| |||||||| || |||||||| || || ||| | ||| || || Sbjct 140698 GCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCACTTC 140639 Query 211070 GAGAGTGATCGTCTTTCC 211087 ||| || || ||||| || Sbjct 140638 GAGTGTAATAGTCTTGCC 140621 >seq107 Length=284601 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| || || ||||| |||||||| |||||||| || || | ||||| Sbjct 96026 ACGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGT 96085 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| ||||| || ||||| || ||||| ||||| | || Sbjct 96086 TCGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACC 96145 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || |||||| | || || ||||| Sbjct 96146 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAG 96205 Query 211073 AGTGATCGTCTTTCC 211087 || || ||||| || Sbjct 96206 GGTAATAGTCTTGCC 96220 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| ||||| | ||||| | || || Sbjct 95687 AGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTACGGCCGTCC 95746 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || || | |||||||||||| Sbjct 95747 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCT 95806 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| || |||||||| || ||||| || || || ||| Sbjct 95807 TGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGTGTAATGGTC 95866 Query 211083 TTTCCCGT 211090 ||||| || Sbjct 95867 TTTCCTGT 95874 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| |||||||| || || | | || | || || || |||||| Sbjct 95468 TGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGC 95527 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || || || || ||||| ||||| | || ||||| ||||| |||||| Sbjct 95528 TTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTT 95587 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || |||||||| || ||| ||||| || ||||||||||| || || Sbjct 95588 GCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTC 95647 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 95648 AGCGTTTTCACAAAGATTTGCAT 95670 Score = 120 bits (132), Expect = 7e-22 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || || |||||||| || |||||||| ||||||| || Sbjct 96565 TCCACGGAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAG 96624 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || |||| ||||| || ||||| || || || || || || ||||||| Sbjct 96625 AGTTCGACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAAT 96684 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAAC 211066 |||||||||||||| || || ||| ||||| || || || ||| ||| ||||| Sbjct 96685 ACCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATCA---CTTGCCTCAAC 96741 Query 211067 CTCGAGAGTGATCGTCTTTCC 211087 || |||||||| ||||| || Sbjct 96742 TTCAAGAGTGATAGTCTTGCC 96762 >seq91 Length=320879 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || ||||| || ||||| || || || || ||||| | || || Sbjct 60853 AGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCC 60794 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| || |||| ||| ||||| ||| Sbjct 60793 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 60734 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || || ||| |||||| || || || |||||| Sbjct 60733 TGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGTGTAATCGTC 60674 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| |||||||| || || | ||||||| Sbjct 60673 TTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 123 bits (136), Expect = 6e-23 Identities = 141/188 (75%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || ||||| ||||||||||| || || ||||| | ||||| Sbjct 62148 AGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 62089 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| || |||| ||| ||||| ||| Sbjct 62088 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCC 62029 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || || |||||| ||| || || ||||| || || Sbjct 62028 TGGATCTTAGCCTTGACGTTCTCAATTGTGTCA---CTTGCCTCCACTTCGAGGGTAATG 61972 Query 211080 GTCTTTCC 211087 ||||| || Sbjct 61971 GTCTTACC 61964 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||||||||| || ||||| || || ||||| | || ||| Sbjct 61438 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCT 61379 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| || || || ||||| || || | ||| ||||| ||| Sbjct 61378 TCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCC 61319 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || || |||||| ||| || || ||||| || || Sbjct 61318 TGGATCTTGGCCTTGACGTTCTCAATTGTGTCA---CTTGCCTCCACTTCGAGGGTAATG 61262 Query 211080 GTCTTTCCCGT 211090 ||||| || || Sbjct 61261 GTCTTACCTGT 61251 Score = 111 bits (122), Expect = 4e-19 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||||||||| |||||||| || || ||||| | ||||| Sbjct 61787 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 61728 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| || |||| ||| ||||| || Sbjct 61727 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 61668 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || || || || || || ||| ||| || || ||||| || || Sbjct 61667 TGGATCTTGGCCTTGACATTCTCAATTGTATCA---CTTGCCTCCACTTCGAGGGTAATG 61611 Query 211080 GTCTTTCC 211087 ||||| || Sbjct 61610 GTCTTGCC 61603 >seq92 Length=311103 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||||||||| || ||||||||||| ||| Sbjct 304136 AGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCAGCGAGGGTCCTTCCGTCT 304077 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||| || || || || || | || || ||||| ||||| | |||| Sbjct 304076 TCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCGGAGGGATTCCT 304026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159130895826665