Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq107 102 7e-17 seq18 100 2e-16 >seq107 Length=284601 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || | || || || |||||||| ||||| |||||| || || || || || | Sbjct 95442 AGCCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTG 95501 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 | || || |||| || ||||| ||||| ||||| || |||||||||||||| | | Sbjct 95502 ACAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAG 95561 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCC 39234 | | | ||| || ||| ||| | | || |||| || | | || ||| | ||| Sbjct 95562 GGATACCCTCCTTATCC-TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCC 95620 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| | || || ||||||||||| |||||||||||||| Sbjct 95621 ACCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq18 Length=819520 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || ||||| |||||| || || || ||||||| || || || | Sbjct 141036 CGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCA 140977 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || || ||||||||||| | || | | || ||| Sbjct 140976 TCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTG 140917 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| ||| |||| || | | ||| ||| | ||||| || | |||||| Sbjct 140916 TCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATA 140857 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || ||||| |||||||| Sbjct 140856 GTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || ||||| ||||||| || ||||| |||| || ||||| ||||| || || Sbjct 140432 TCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAA 140373 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | ||| |||||| |||||| || | | Sbjct 140372 ATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTT 140313 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | |||||| || | ||| || |||| ||| || Sbjct 140312 TCGATCGTATCACTTGCCTCGACTTCCAGCGTAAT 140278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429538160941373