Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 143 6e-29 seq107 127 5e-24 seq91 116 9e-21 seq730 93.3 1e-13 >seq18 Length=819520 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | ||| || || || ||||| |||| |||||||||| || || Sbjct 141042 CGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTG 140983 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| || || || || || ||||| ||||| |||||| Sbjct 140982 CGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCT 140923 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||||| ||||| || | |||||| || | Sbjct 140922 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGT 140863 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||| || || | || | ||||||| Sbjct 140862 GTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || |||||||| |||| ||||||||||| || |||| || ||| Sbjct 140453 AGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCT 140394 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || ||||| || ||||| || |||||||| Sbjct 140393 TCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC 140334 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| |||||| || || | || || || | ||| || ||| Sbjct 140333 TGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCGACTTCCAGCGTAATTGTC 140274 Query 225682 TTGCC 225686 ||||| Sbjct 140273 TTGCC 140269 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| ||||||||||||| ||||| |||| | || | || || Sbjct 139902 AGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCC 139843 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| || || || || || || ||||||||||||||||| Sbjct 139842 TCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 139783 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || |||||| || || | || || || | ||||| ||| Sbjct 139782 TGGATTTTGGCCTTGACGTTTTCGATCGTATCACTTGCCTCAACTTCGAGGGTGATGGTC 139723 Query 225682 TTGCC 225686 || || Sbjct 139722 TTACC 139718 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| || | | || | || ||| Sbjct 140805 AGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 140746 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||||||| |||||||| | || || || || || ||||| |||||||||||| Sbjct 140745 TCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCT 140686 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||| || || || || |||||| || | || || ||| Sbjct 140685 TGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCACTTCGAGTGTAATAGTC 140626 Query 225682 TTGCC 225686 ||||| Sbjct 140625 TTGCC 140621 >seq107 Length=284601 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| || |||||||| || ||||| |||| ||||| || | | || Sbjct 96026 ACGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGT 96085 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 96086 TCGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACC 96145 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| || || || || | Sbjct 96146 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAG 96205 Query 225672 CGTGATCGTCTTGCC 225686 || || |||||||| Sbjct 96206 GGTAATAGTCTTGCC 96220 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| | || || || || ||||| |||| ||||| || | ||| || Sbjct 95450 CGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTG 95509 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| || || || || || ||||| || || ||||| Sbjct 95510 CGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCC 95569 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || || |||||| ||| || || |||||||| || | |||||| || | Sbjct 95570 TCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGT 95629 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || |||| ||||| | || | |||||| Sbjct 95630 GTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || ||||| || || || || |||| |||||||| | || || Sbjct 95678 CGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTA 95737 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || ||| Sbjct 95738 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCT 95797 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||| || ||||| || | || || || | Sbjct 95798 TCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGT 95857 Query 225673 GTGATCGTCTTGCCCGT 225689 || || ||||| || || Sbjct 95858 GTAATGGTCTTTCCTGT 95874 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| ||||| || || |||| |||||||| | | ||||| || || Sbjct 96578 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCC 96637 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||||| ||||| || || || || || || || ||||||||||||||||| Sbjct 96638 TCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 96697 Query 225622 TGGATCTTTTGCTT 225635 || || ||| |||| Sbjct 96698 TGAAT-TTTGGCTT 96710 >seq91 Length=320879 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || ||||| |||||||| ||||| | |||||| ||| | || Sbjct 60862 CGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTG 60803 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 60802 CGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCC 60743 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||||| ||| || || || || || | ||| || || | Sbjct 60742 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACTTCAAGT 60683 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||||||||||||||| ||| || | ||| | |||||| Sbjct 60682 GTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| ||||| ||| | || | ||||| Sbjct 61787 AGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCC 61728 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || ||||| || ||||| ||| Sbjct 61727 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 61668 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || || || | ||||| || | || || ||| Sbjct 61667 TGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCACTTCGAGGGTAATGGTC 61608 Query 225682 TTGCC 225686 ||||| Sbjct 61607 TTGCC 61603 >seq730 Length=6546 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 7744 TTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGT 7803 ||| | |||| ||| ||||||||||||| ||||||||||| | | | |||||| | Sbjct 245 TTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAAT 186 Query 7804 TTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCGTTAGCTT 7862 | |||||||||| || |||||| ||||| | | |||||||| || || |||| || |||| Sbjct 185 TCCTTTGAGTTTCAATCTTGCGATCGTACTCCCCAGGTGGATTACTTAACGCTTTCGCTT 126 Query 7863 A 7863 | Sbjct 125 A 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192509488106174