Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq107 118 2e-21 seq91 111 4e-19 seq18 107 4e-18 >seq107 Length=284601 Score = 118 bits (130), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| ||||| ||||| |||||||| ||||||||||| || | | |||| Sbjct 96029 GAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCG 96088 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || ||||| || || | ||||||||||| | ||| ||||| Sbjct 96089 GCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTC 96148 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| || || || || |||||| | || | |||| ||| ||||||||| || Sbjct 96149 CTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTC---ACTGGCCTCTACTTCGAG 96205 Query 152063 AGTAATAGTTTTGCC 152077 |||||||| ||||| Sbjct 96206 GGTAATAGTCTTGCC 96220 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| |||||||| || || ||||| || |||||||||||||| | | ||||| Sbjct 96571 GAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCG 96630 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || | ||||| ||||| || |||| |||||| |||| | || ||||| Sbjct 96631 ACCGTCCTCCAATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTC 96690 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAG 152062 ||| || |||||||| |||||| |||| | | || ||| ||| |||||||| Sbjct 96691 CTTGTCCTGAATTTTGGCTTTGACGTTCTCAATCGTATC---ACTTGCCTCAACTTCAAG 96747 Query 152063 AGTAATAGTTTTGCC 152077 ||| ||||| ||||| Sbjct 96748 AGTGATAGTCTTGCC 96762 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || ||||| || |||||||||||||| | | || | || || Sbjct 95687 AGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGACAGGGTACGGCCGTCC 95746 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || |||||||||||| ||| Sbjct 95747 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCT 95806 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | |||| || |||||| ||||| ||||| || Sbjct 95807 TGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGCCTCTACCTCAAGTGTAATGGTC 95866 Query 152073 TTGCCCGT 152080 || || || Sbjct 95867 TTTCCTGT 95874 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || ||||||||||| ||||||||||| || | || || | || || || Sbjct 95461 GACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTC 95520 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || || || || || || | ||||||||||| | ||| || ||||| || || Sbjct 95521 GAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTG 95580 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| ||| ||||| |||| | | |||| ||| || || ||||| || || || || Sbjct 95581 AATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTT 95640 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| |||| ||||| Sbjct 95641 ACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq91 Length=320879 Score = 111 bits (122), Expect = 4e-19 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || || || ||||| || ||||| ||| | || | || || Sbjct 60853 AGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCC 60794 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| || | ||||||||||| | ||||| ||||| | Sbjct 60793 TCCAGCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTAT 60736 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC--TCTACTTCAAGAGTAAT 152068 | || || || ||||| |||| | ||| | | | || |||||||| ||||| Sbjct 60735 CCTGGATCTTGGCCTTGACGTTCTCAAT--TGTATCACTTGCTTCAACTTCAAGTGTAAT 60678 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| |||||||||||||||| ||||||| Sbjct 60677 CGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/191 (72%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||||||||| || |||||||| |||||||||||||| ||| | || | ||||| Sbjct 62149 GAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATC 62090 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||| ||||| || | ||||||||||| | ||||| ||||| Sbjct 62089 CTCCAGCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTA 62032 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTA 152066 || || || || ||||| |||| | |||| ||| ||| ||||| || ||| Sbjct 62031 TCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTC---ACTTGCCTCCACTTCGAGGGTA 61975 Query 152067 ATAGTTTTGCC 152077 || || || || Sbjct 61974 ATGGTCTTACC 61964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/185 (72%), Gaps = 9/185 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| ||||||||||| ||| | || | ||||| || | Sbjct 61782 CAAG-TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCA 61724 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| || | ||||||||||| | ||||| ||||| ||||| Sbjct 61723 GCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCTTG 61666 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT--CTCTACTTCAAGAGTAATAGTT 152072 || || |||||| |||| | ||| | | | ||| ||||| || ||||| || Sbjct 61665 GATCTTGGCCTTGACATTCTCAA--TTGTATCACTTGCCTCCACTTCGAGGGTAATGGTC 61608 Query 152073 TTGCC 152077 ||||| Sbjct 61607 TTGCC 61603 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/187 (71%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || |||||||| ||| | |||| || ||||| | Sbjct 61433 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCCA 61375 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| ||||| || | ||||||||||| | |||||| ||||| || || | Sbjct 61374 GCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGA 61315 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||||| |||| | |||| ||| ||| ||||| || ||||| || | Sbjct 61314 TCTTGGCCTTGACGTTCTCAATTGTGTC---ACTTGCCTCCACTTCGAGGGTAATGGTCT 61258 Query 152074 TGCCCGT 152080 | || || Sbjct 61257 TACCTGT 61251 >seq18 Length=819520 Score = 107 bits (118), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| |||||||||||||||| | || | ||||| || | Sbjct 141028 CAAG-TGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCA 140970 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || |||| ||||||||||| || ||| |||||||| ||||| | Sbjct 140969 GCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGA 140910 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | |||| ||| || || || || || ||||| || | Sbjct 140909 TCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCC 140850 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || | |||||| Sbjct 140849 CGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| ||||| || ||||||||||||||||| |||| | || | Sbjct 139909 GAGACGGAGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCG 139850 Query 151946 CCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || | ||||| || |||||||| || | |||||| |||| | || ||| Sbjct 139849 ACCGTCCTCCAACTGCTTT--CCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCT 139792 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| || || ||||| Sbjct 139791 TCCTTGTCCTGGATTTT 139775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153799792889491