Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq107 127 1e-24 seq18 127 1e-24 seq91 123 2e-23 >seq107 Length=284601 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| || ||||| ||| || ||||||||||| || | | ||| |||| Sbjct 95458 CAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTC 95517 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || ||||| || | ||||||||| || | ||| | ||| ||||| || Sbjct 95518 CTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATC 95577 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||| | | |||| | |||||||||| | ||||||||| | || |||| Sbjct 95578 CTGAATCTT-TGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCG 95636 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || || ||||| ||||||||||| Sbjct 95637 TCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||| || || || |||||| ||||||||||| Sbjct 95665 TTGCATACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTA 95724 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || || |||| || |||||||| ||||| ||||| | ||||||||| || Sbjct 95725 ATCAGACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 95784 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | |||||||| || |||||| ||| | || | || ||||| | | Sbjct 95785 CGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGC 95844 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || ||||| | ||||| |||||||| || Sbjct 95845 CTCTACCTCAAGTGTAATGGTCTTTCCTGT 95874 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| |||||||||||||| | ||| || |||| ||| Sbjct 96581 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCGTCCTCC 96640 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 | |||||||| || || |||| ||||||||||| | ||| | ||||||||| ||| Sbjct 96641 AATTGCTTCCCCGCGAAAATCAGCCGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 96697 >seq18 Length=819520 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | ||| |||| ||| ||||| ||| || |||||||||||||||| Sbjct 141049 TCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGA 140990 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || ||||||||||| || ||||| || | |||||||| || | || Sbjct 140989 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGG 140930 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||||||| || |||||| || | | |||| | || ||||||| | ||||| Sbjct 140929 GATACCTTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCA 140871 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| || || || ||||| || || |||||||| Sbjct 140870 CCTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | ||| | | |||||| || || || ||||| ||||||||||| Sbjct 140827 TTGCATTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTA 140768 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| |||| |||| |||||||||||| |||||||| ||||||||||| Sbjct 140767 GTCAGAGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATC 140708 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | |||||||| || ||||| ||| | || | || || || || Sbjct 140707 CGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGC 140648 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCC 44310 |||||| || | ||||| ||||| || Sbjct 140647 TTCCACTTCGAGTGTAATAGTCTTGCC 140621 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| |||| ||| || |||| |||| |||||| || || ||| Sbjct 139881 TCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAG 139822 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||||||||| | ||| | ||||||||| ||| Sbjct 139821 ATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCC 139783 >seq91 Length=320879 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | || || || || || ||| |||||||| || ||||| || Sbjct 60872 CATTCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTC 60813 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| ||||||||||| ||||||||||||| ||||||||| || | Sbjct 60812 GCTGAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGG 60753 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| || | | |||| | || || || | || Sbjct 60752 GGGAATTCCCTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATTGTATCACTTGCTT 60694 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 60693 CAACTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| |||||| ||| ||| || ||||||||||| || Sbjct 61806 CATTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTC 61747 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| ||||||||||||| ||||||||| || | Sbjct 61746 GCTGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGG 61687 Query 44227 AGGCACACCTTCCTTTTC 44244 || | || ||||| || Sbjct 61686 GGGAATTCCCTCCTTATC 61669 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | ||| | | ||||| |||||| ||| ||| || || |||||||| Sbjct 61460 TTGCATTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTA 61401 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| ||| || |||| |||||||| || ||||||||||||| ||||||||| || Sbjct 61400 GTCGCTGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTC 61341 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| ||||| || | | |||| | || ||||| | Sbjct 61340 CGGGGGGATTCCCTCCTTATCCTGGATCTT-GGCCTTGACGTTCTCAATTGTGTCACTTG 61282 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| || | ||||| ||||| || || Sbjct 61281 CCTCCACTTCGAGGGTAATGGTCTTACCTGT 61251 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| ||| ||| ||| | || ||||||||||| |||||||| Sbjct 62128 CTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAA 62069 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||||||||| || | || | || ||||| ||| ||||| || | | || Sbjct 62068 GATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTT-AGCCTTGACGT 62010 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCC 44310 || | || ||||| | ||||| || | ||||| ||||| || Sbjct 62009 TCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTACC 61964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984165528757