Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq107 158 3e-33 seq18 154 4e-32 seq91 125 2e-23 seq92 100 7e-16 >seq107 Length=284601 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || || |||||||| || ||||||||| || ||| Sbjct 95667 CAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCCGAC 95608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||||||| || || || ||||||||||||||||| Sbjct 95607 ACCATTGAGAACGTCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAGCAG 95548 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || |||||||| || || | || | | || || ||| || Sbjct 95547 CGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAACATC 95488 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || || |||||| | || ||| Sbjct 95487 CAGAAAGAGTCTACGCTGCATTTGGTCTTG 95458 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 |||||||| || || || || ||||| || || ||||| || || || || || Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTTAAGGCG 95815 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||| ||||||||||| || || ||||||||||| || Sbjct 95814 AAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAG 95755 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || | ||||| ||| |||| || || || || || ||| Sbjct 95754 CAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCAT 95695 Query 178125 CTTGT 178129 || || Sbjct 95694 CTGGT 95690 Score = 120 bits (132), Expect = 7e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| || || || |||||||| || || | ||||| || || || ||||| | Sbjct 96222 CAGGCAAGACTATTACCCTCGAAGTAGAGGCCAGTGACACTATTGAAAATGTCAAGGCCA 96163 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| ||||| || ||||| ||||||||||||||||| || || || ||||| || || | Sbjct 96162 AGATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGCGCCTCATTTTCGCTGGCAAGC 96103 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||||||||| | || || | || || ||| |||| ||||| || || || |||| Sbjct 96102 AGCTCGAAGATGGCCGAACCCTCTCAGACTACAACATCCAGAAAGAGTCGACTCTCCATC 96043 Query 178126 TTGT 178129 | || Sbjct 96042 TCGT 96039 Score = 105 bits (116), Expect = 2e-17 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || ||||| || || || || ||| || || || |||||||||||| Sbjct 96764 CAGGCAAGACTATCACTCTTGAAGTTGAGGCAAGT---GATACGATTGAGAACGTCAAAG 96708 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 || ||||||||||| ||||| || |||||||| ||||| || || || ||||| || | Sbjct 96707 CCAAAATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGGA 96648 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || | || || || | ||||| | ||||| ||| |||| || || || || || | Sbjct 96647 AGCAATTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTCC 96588 Query 178123 ATCTTGTT 178130 |||||||| Sbjct 96587 ATCTTGTT 96580 >seq18 Length=819520 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || || ||||| |||||||||||| || ||| Sbjct 140825 CAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCCGAC 140884 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 140885 ACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAGCAG 140944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||||| || ||||| | || || ||||||| ||| || Sbjct 140945 CGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAACATC 141004 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || ||||| |||| Sbjct 141005 CAGAAAGAGTCGACGCTGCA-CTTG 141028 Score = 131 bits (144), Expect = 4e-25 Identities = 142/187 (76%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || ||||||||||| || || ||| || || ||||| |||||||| Sbjct 139716 CAGGTAAGACCATCACCCTCGAAGTTGAGGCAAG---TGATACGATCGAAAACGTCAAGG 139772 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 || || |||||||| ||||| || |||||||| ||||| || || |||||||| |||| Sbjct 139773 CCAAAATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGAA 139832 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||| | || || || |||| || |||| || ||| |||||||||||||||| || | Sbjct 139833 AGCAGTTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAACTCTCC 139892 Query 178123 ATCTTGT 178129 |||| || Sbjct 139893 ATCTCGT 139899 Score = 107 bits (118), Expect = 5e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| || || || || ||||| |||||| | || || || || |||||||| | Sbjct 140619 CAGGCAAGACTATTACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACGTCAAGGCCA 140678 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| ||||| || || ||||| ||||| || | ||||||||||| || | Sbjct 140679 AGATCCAAGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGC 140738 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 || | ||||| || | || || | || || ||| |||| || |||||||| || |||| Sbjct 140739 AGTTGGAAGACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATC 140798 Query 178126 TTGT 178129 | || Sbjct 140799 TGGT 140802 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || || ||||| || || || || || |||||||| || ||||| |||||||||||| Sbjct 140302 GATACGATCGAAAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCGGACCAG 140361 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || ||||| || || ||||| ||||| || | || || ||||||| || Sbjct 140362 CAGCGTCTCATTTTCGCTGGCAAGCAGCTGGAAGACGGCCGAACCCTGTCCGATTACAAT 140421 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || ||||| || Sbjct 140422 ATCCAGAAAGAATCGACCCTCCATCTCGT 140450 >seq91 Length=320879 Score = 125 bits (138), Expect = 2e-23 Identities = 140/186 (75%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAACA 178003 ||| || || || |||||||| ||||| ||| ||||| || ||||||||||| Sbjct 61963 AGGTAAGACCATTACCCTCGAAGTGGAGGCAAGT---GACACAATTGAGAACGTCAAGGC 62019 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| ||||| || || ||||| || ||||||||||| || || ||||| |||||||| Sbjct 62020 TAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 62079 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||||| || ||||| | || || ||| || ||| ||||||| || || || || || Sbjct 62080 GCAGCTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCTACCCTCCA 62139 Query 178124 TCTTGT 178129 |||||| Sbjct 62140 TCTTGT 62145 Score = 123 bits (136), Expect = 6e-23 Identities = 141/187 (75%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||| ||||| ||| ||||| || ||||||||||| Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGT---GACACAATTGAGAACGTCAAG 61307 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || |||||||| ||||||||||| || || ||||| |||||| Sbjct 61308 GCCAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGA 61367 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 |||||||| ||||| || | || || ||| || ||| | || ||||| || || || Sbjct 61368 AAACAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTT 61427 Query 178122 CATCTTG 178128 || |||| Sbjct 61428 CA-CTTG 61433 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || ||||| || || || || ||| || Sbjct 60645 CAGATCTTCGTGAAGACTCTGACGGGCAAGACGATTACACTTGAAGTTGAAGCAAGTGAT 60704 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 60705 ACAATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAG 60764 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || || || | || || ||| || || | Sbjct 60765 CGTCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGTCGCACCCTCAGCGACTACAATATT 60824 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 60825 CAAAAGGAATCCACCCTCCATCTCGT 60850 Score = 102 bits (112), Expect = 2e-16 Identities = 135/185 (73%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATCGAGAACGTCAAACA 178003 ||| || || || |||||||| ||||| ||| || || || ||||| ||||| Sbjct 61602 AGGCAAGACCATTACCCTCGAAGTGGAGGCAAGT---GATACAATTGAGAATGTCAAGGC 61658 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| || || || || ||||| || ||||||||||| || || ||||| |||||||| Sbjct 61659 CAAGATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 61718 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||||| || ||||| | || || ||| || ||| |||| ||||| || || || || Sbjct 61719 GCAGCTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAAGAGTCCACCCTTCA 61778 Query 178124 TCTTG 178128 |||| Sbjct 61779 -CTTG 61782 >seq92 Length=311103 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||||||||| || | || || ||||| |||||||| ||||| ||||| Sbjct 304026 AGGAATCCCTCCGGACCAGCAGCGGTTGATTTTTGCCGGGAAACAGCTGGAAGACGGAAG 304085 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || ||||||||| | || || || || || || ||||| || Sbjct 304086 GACCCTCGCTGATTATAACATTCAGAAGGAGTCGACCCTCCATCTCGT 304133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203709284192674