Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq107 136 4e-27 seq18 116 3e-21 seq91 104 2e-17 seq92 87.8 2e-12 >seq107 Length=284601 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| || |||| ||||||||| ||| ||||| ||||| ||||| || Sbjct 95443 GCCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGA 95502 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| |||| |||||||||||||| || || || || ||||| ||||||| || Sbjct 95503 CAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGG 95562 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | ||||| | ||| | | |||||| | |||| Sbjct 95563 GATACCCTCCTTATCC-TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCA 95621 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| ||||| |||||||| || || || || ||||| Sbjct 95622 CCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 111 bits (122), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||||| || || ||||||||| ||||| || || || Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 ||||| || |||| |||||||||||||||||||| || || ||||| |||||| ||||| Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 41755 AACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 95792 ATTCCT-TCCTTGTC 95805 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || || ||| ||||| ||||| ||||| || Sbjct 96020 GCCACCACGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGA 96079 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || | || |||||||||||||| ||||| || |||||||| ||||||| || Sbjct 96080 GAGGGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGG 96139 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | ||||| ||| ||| || Sbjct 96140 GATACCTTCCTTATCCTGGATCTT 96163 >seq18 Length=819520 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||| || || |||||||| ||||| ||||| ||| Sbjct 140820 CCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAG 140761 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || | |||||| |||||||| |||| |||||| || |||| |||| Sbjct 140760 AGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGGA 140701 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 140700 ATGCCTTCCTTGTC 140687 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| |||||||| ||| ||||| ||||| || ||||| Sbjct 141048 CCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGAC 140989 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || ||||| | || || ||||||||||| || || || || ||||| |||||| ||||| Sbjct 140988 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGG 140929 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | |||||| | ||||| Sbjct 140928 ATACCT-TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||||||||| || ||||| ||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || || ||||| || || || ||||| Sbjct 140468 CCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGAC 140409 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| || || ||||| ||||||| ||| Sbjct 140408 AGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 140349 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | | |||||||||| |||||| ||||| Sbjct 140348 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCA 140318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || || || || ||||| ||||||||| Sbjct 139917 CCGCCACGGAGACGGAGGACGAGATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAG 139858 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||| || ||||| ||||| ||||| || |||| ||| Sbjct 139857 AGCGTCCGACCGTCCTCCAACTGCTTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGA 139798 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | ||||||||| |||||| Sbjct 139797 ATACCTTCCTTGTCCTGGATTTT 139775 >seq91 Length=320879 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||| ||||||||||| |||||| | Sbjct 61453 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTG 61394 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||| || ||||| || ||||| ||||| ||||||| ||| Sbjct 61393 AGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 61334 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||| ||| ||| || ||| |||| | || ||||| || | ||| Sbjct 61333 ATTCCCTCCTTATCCTGGATCTTGGCCTT----GACGTTCTCAATTGTGTCACTTGCCTC 61278 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTC 41839 ||| || | || || || ||||| ||| Sbjct 61277 CACTTCGAGGGTAATGGTCTTACCTGTC 61250 >seq92 Length=311103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || |||||||| || || | || ||||| || || |||||||||||||||||| || Sbjct 304154 CCACCGCCGCGGAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCA 304095 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 | |||||| | |||| || ||||| || ||||| || |||| ||||| ||||||| Sbjct 304094 GCGAGGGTCCTTCCGTCTTCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCG 304037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295788325200