Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2628 129 6e-25 >seq2628 Length=67642 Score = 129 bits (142), Expect = 6e-25 Identities = 170/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 ||| ||| ||||||||||| || || ||||| |||||||| ||||| | ||| ||||| | Sbjct 41115 CCAAGTTTTCATTCACGATGCCATCGCTTGCTGCAAAAAAAGCCAAAACGTGTTTAATAA 41056 Query 16647 AATATTTTTCGTCAG-ATGTAAGA-ATA-TGCCAATCTTTTAAATCTTTGGATATATCCA 16703 ||| ||||||| || ||| || | |||||| | || | | || ||| | Sbjct 41055 AATGCCTTTCGTCGTCATTTAATTTATCGTTCCAATCAGAAACGTCATGGCTTAAATCAA 40996 Query 16704 CTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGT 16763 |||| || | |||||||| || ||||||||||| ||||||||||||| ||||| || Sbjct 40995 CTTCATCAGTTGTCCAAAAAGAGGCTACTGCCTTTTTGTACATTTTCCAAAGATCATCGT 40936 Query 16764 ATTGTATGGGAAATACGACGTATCTATCTAAGGATTCCTTTAACACGGGTTC 16815 ||| |||||||| | |||||||| | | ||| ||||||| |||||| Sbjct 40935 ATTTAATGGGAAACATGACGTATCGTTTTTCTTCTTCATTTAACATGGGTTC 40884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391897766400