Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3020 156 3e-33 >seq3020 Length=37895 Score = 156 bits (172), Expect = 3e-33 Identities = 433/658 (66%), Gaps = 7/658 (1%) Strand=Plus/Plus Query 18550 ATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGAA 18609 || |||| |||| | || ||||| |||||||| ||| || | ||| ||||| | | Sbjct 24440 ATAGAACTGGAACTGATACTTTATCAATATTTGGAGCACAATCTAGGTACGATTTGAGTA 24499 Query 18610 ATGAATTT---CCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 ||| || || |||| |||||||| || || || ||||| | || || ||||||| Sbjct 24500 ATGGTGTTATACCAGTTTTGACTACAAAACGCGTATTCTGGAGAGGAGTTGTAGAAGAGT 24559 Query 18667 TGTTATGGTTTATCCGCGGG-TCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACAC 18725 |||| ||| |||| ||||| | ||| |||| || | | | | | | || | | Sbjct 24560 TGTTGTGGATTAT-AGCGGGATGCACCAATTCTAATGTATTAACAAATCGAAATGTTAAA 24618 Query 18726 ATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACAC 18785 || |||||| | || || || ||||| | ||| || ||| | | ||| | Sbjct 24619 ATTTGGGATCAGAATGGGTCTAGAGAATTTTTGGATAATTTAGGATTCAAAGATAGAAAA 24678 Query 18786 ACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAA 18845 || || || | || || | || || || || ||||| ||||| || || |||| ||| Sbjct 24679 ACTGGTGATTTAGGTCCAGTGTATGGATTTCAATGGAGGCATTTCGGTGCTAAATACAAA 24738 Query 18846 GACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 ||| | || ||| | |||||| | ||||| ||| || ||||||| || | Sbjct 24739 ACATGTGATGATAATTATGATAAACAAGGAGTGGATCAACTGGCAAATGTTATACATTTA 24798 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 ||||||| |||| || ||| | |||| | |||| || ||||| | | |||| | Sbjct 24799 ATTAAAAACGACCCGGATAGCAGGAGAATTGTATTATCTTCATGGAACGCTATGGATTTG 24858 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 || |||| |||| ||||| || | ||||| || || ||| || | Sbjct 24859 CCGGATATGGCGTTACCCCCATGCCATTGTCTCTGTCAATTCTATGTTTGTAATAACAAG 24918 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 ||||| || || ||||||| |||| | |||||||| ||||| || || ||||| ||| Sbjct 24919 TTATCGTGTCAGTTATACCAACGATCTGCAGATATGGGACTTGGTGTCCCATTCAATATT 24978 Query 19086 GCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC-AGGACTTAAAACCGGAGA 19144 ||| | ||| | ||| | || | || | || ||| |||| | || | || | || || Sbjct 24979 GCTAGCTATTCTCTTTTAACTTTTATGCTGGCTCATATTACTAATAC-TGAACCTGGTGA 25037 Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAA 19202 || ||||| || || || ||||| ||| |||| | |||||| | || |||||||| Sbjct 25038 ATTTATTCACACTATTGGAGATGCTCATGTTTATGTTAATCATGTTGAACCTTTAAAA 25095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399486861278400