Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3020 206 2e-48 >seq3020 Length=37895 Score = 206 bits (228), Expect = 2e-48 Identities = 433/638 (68%), Gaps = 18/638 (3%) Strand=Plus/Minus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 |||||| || |||| |||| ||||| | ||||||||||| ||||| || ||||| | Sbjct 25095 TTTTAA-AGGTTCAACATGATTAACATAAACATGAGCATCTCCAATAGTGTGAATAAATT 25037 Query 101736 CTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAA 101795 | ||||| | |||||| | |||||| | ||| |||||||||||||||||||||||| Sbjct 25036 CACCAGGTTCAGTATTAGTAATATGAGCCAGCATAAAAGTTAAAAGAGAATAGCTAGCAA 24977 Query 101796 TGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 | || ||||| || || | |||||||| || |||| ||| || | ||||| || | || Sbjct 24976 TATTGAATGGGACACCAAGTCCCATATCTGCAGATCGTTGGTATAACTGACACGATAACT 24917 Query 101856 TTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAA 101915 | || ||| ||||| ||||||| | ||| || || || ||| |||| | || | Sbjct 24916 TGTTATTACAAACATAGAATTGACAGAGACAATGGCATGGGGGTAACGCCATATCCGGCA 24857 Query 101916 TGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATA 101974 || | | ||||| | | | | || || || || || | || | |||||| || Sbjct 24856 AATCCATAGCGTTCCATGAAGATAATACAATTCTCCT-GCTATCCGGGTCGTTTTTAATT 24798 Query 101975 GTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACAC-- 102032 || || | | | | ||| || ||||||| ||||| || || ||| Sbjct 24797 AAATGTATAACATTTGCCAGTTGATCCACTCCTT---GTTTATCATAATTATCATCACAT 24741 Query 102033 -CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 ||| |||| || |||||||||||||| |||||||||||||| || || | ||| || Sbjct 24740 GTTTTGTATTTAGCACCGAAATGCCTCCATTGAAATCCATACACTGGACCTAAATCACCA 24681 Query 102092 TCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAA 102151 | ||| || | || || | ||||| |||||| |||||| |||||| ||||||| Sbjct 24680 GTTTTTCTATCTTTGAATCCTAAATTATCCAAAAATTCTCTAGACCCATTCTGATCCCAA 24621 Query 102152 ATGTGCAC---GCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 || | || | | || | ||| | || | || |||| |||| |||| Sbjct 24620 ATTTTAACATTTCGATTTGTTAATA---CATTAGAATTGGTGCATCCCGCTATAATCCAC 24564 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGG---AAAT 102265 |||| ||||| ||||| |||||||| ||||| | || ||||| |||| ||| || Sbjct 24563 AACAACTCTTCTACAACTCCTCTCCAGAATACGCGTTTTGTAGTCAAAACTGGTATAACA 24504 Query 102266 TCATTTTCTAAACTAAACCTAGACTGTGTTCCAAAAAT 102303 |||| ||| ||||||| |||| |||||| || Sbjct 24503 CCATTACTCAAATCGTACCTAGATTGTGCTCCAAATAT 24466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361235702323520